View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_20 (Length: 308)
Name: NF1929_low_20
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 47279489 - 47279795
Alignment:
| Q |
2 |
ttttttccttattaatgactagagggagtatataatttannnnnnnnnaataaactagagggagtatataattatctagtttgttgatgaatagtcaaat |
101 |
Q |
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| T |
47279489 |
ttttttccttattaatgactagagggagtatataattt-tttttttttaataaactagagggagtatataattatctagtttgttgatgaatagtcaaat |
47279587 |
T |
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| Q |
102 |
aaattaaacaatacacactttttatttt-gttacaaactatacgcaatttgagttcaccctttgtatctcatatttaatatttaattcatgaacaagtta |
200 |
Q |
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| T |
47279588 |
aaattaaacaatacacactttttttttttgttacaaactatacgcaatttgagttcaccctttgtatctcatatttaatatttaattcatgaacaagtta |
47279687 |
T |
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| Q |
201 |
tgttgatgaattgtcaaataaattaaactatacacaatttttggtagaagccagtttcgaaccaagagcttcaaggttgaaacatacactttcaaccaag |
300 |
Q |
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| T |
47279688 |
tgttgatgaattgtcaaataaattaaactatacacaatttttggtagaagccagtttcgaaccaagagcttcaaggttgaaacatacactttcaaccaag |
47279787 |
T |
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| Q |
301 |
aaagatcg |
308 |
Q |
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| T |
47279788 |
aaagatcg |
47279795 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 45699707 - 45699651
Alignment:
| Q |
251 |
ccagtttcgaaccaagagcttcaaggttgaaacatacactttcaaccaagaaagatc |
307 |
Q |
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| T |
45699707 |
ccagttttgaaccaagagcttcaaggttgaaatatacactttcaaccaagaaagatc |
45699651 |
T |
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