View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1929_low_22 (Length: 251)
Name: NF1929_low_22
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_22 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 49768842 - 49768603
Alignment:
| Q |
8 |
cgaagaaaattacacaaacttgtaaattcctctacacatgatgccagagtttcaaaaaatggtacattatcactatttggccaaaacatcgtcgannnnn |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49768842 |
cgaacaaaattacacaaacttgtaaattcctctacacatgatgccagagtttcaaaaaatggtacattatcactatttggccaaaacatcgtcgattttt |
49768743 |
T |
|
| Q |
108 |
nnatatctctgcaaccacaaccaagattgtatcaactgcatttgacagtaattcaactgtcaaatatcaagaattacgatgcaaccactacttaaaacct |
207 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49768742 |
t-atatctc-gcaaccacaaccaatattgtatcaactgcatttgacagtaattcaaca--caaatatcaagaattacgatgcaaccactacttaaaacct |
49768647 |
T |
|
| Q |
208 |
tacataatttctttaagattcatttcaaaactagaacaaacaca |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49768646 |
tacataatttctttaagattcatttcaaaactagaacaaacaca |
49768603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 3829504 - 3829630
Alignment:
| Q |
117 |
tgcaaccacaaccaagattgtatcaactgcatttgacagtaattcaactgtcaaatatcaagaattacgatgcaaccactacttaaaaccttacataatt |
216 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| | ||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
3829504 |
tgcaaccacgaccaagatactatcaactgcatttgcccgtaattctact--caaatatcaagaattacgacgcaaccaacacttaaaaccttacataatt |
3829601 |
T |
|
| Q |
217 |
tctttaagattcatttcaaaactagaaca |
245 |
Q |
| |
|
||||| ||||||| |||||| ||||||| |
|
|
| T |
3829602 |
cctttatgattcatctcaaaattagaaca |
3829630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University