View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_23 (Length: 249)
Name: NF1929_low_23
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34975605 - 34975842
Alignment:
| Q |
1 |
ataaatcagctttttgtccttgaaattataagggtcggacaatttagtttttcaaatttgcattatgacaattgttgaatgtagataccgtattgttttc |
100 |
Q |
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| T |
34975605 |
ataaatcagctttttgtctttgaaattataagggtcggacaatttagtttttcaaatttgcattatgacaattgttgaatgtagatgccgtattgttttc |
34975704 |
T |
|
| Q |
101 |
tacggagatatctgttttcaggtactaaattaacagacattatttagtataagagactaaattgctatttcaaaaattaagggactaagttgtctgacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34975705 |
tacggagatatctgttttcaggtactaaattaacagacattatttagtataagagactaaattgctatttcaaaaattaagggactaggttgtctgacac |
34975804 |
T |
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| Q |
201 |
ttgattttcaaggataaaaaagctcattttctcatatt |
238 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
34975805 |
ttgattttcaaggacaaaaaagctcattttctcatatt |
34975842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 35138629 - 35138584
Alignment:
| Q |
16 |
gtccttgaaattataagggtcggacaatttagtttttcaaatttgc |
61 |
Q |
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|||||||||||| ||||| |||| ||||||||| |||||||||||| |
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| T |
35138629 |
gtccttgaaattttaaggatcggtcaatttagtatttcaaatttgc |
35138584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 46631262 - 46631307
Alignment:
| Q |
16 |
gtccttgaaattataagggtcggacaatttagtttttcaaatttgc |
61 |
Q |
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|||||||||||| |||||||||| ||||||| | |||||||||||| |
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| T |
46631262 |
gtccttgaaattttaagggtcggtcaatttaatctttcaaatttgc |
46631307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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