View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_low_25 (Length: 244)

Name: NF1929_low_25
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_low_25
NF1929_low_25
[»] chr4 (10 HSPs)
chr4 (1-222)||(52137262-52137486)
chr4 (1-70)||(26496365-26496435)
chr4 (1-59)||(56156936-56156995)
chr4 (1-64)||(56157552-56157616)
chr4 (1-59)||(20625560-20625619)
chr4 (1-64)||(8363445-8363509)
chr4 (1-64)||(36244823-36244887)
chr4 (1-59)||(20620140-20620199)
chr4 (1-59)||(36243520-36243579)
chr4 (1-66)||(26495116-26495182)
[»] chr7 (5 HSPs)
chr7 (1-71)||(41328208-41328279)
chr7 (1-64)||(39981313-39981377)
chr7 (1-59)||(32653464-32653523)
chr7 (1-59)||(41329526-41329585)
chr7 (7-59)||(32653729-32653782)
[»] chr2 (6 HSPs)
chr2 (1-65)||(28611308-28611373)
chr2 (3-63)||(8321301-8321362)
chr2 (1-65)||(28610017-28610082)
chr2 (1-59)||(4921114-4921173)
chr2 (1-38)||(45699523-45699560)
chr2 (3-59)||(4919828-4919885)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-64)||(6891-6955)
[»] chr8 (2 HSPs)
chr8 (1-64)||(9854935-9854999)
chr8 (1-39)||(9853589-9853627)
[»] chr1 (6 HSPs)
chr1 (1-68)||(51445582-51445650)
chr1 (1-59)||(14478267-14478326)
chr1 (1-64)||(28050317-28050381)
chr1 (1-64)||(28051663-28051727)
chr1 (1-59)||(14479571-14479630)
chr1 (1-59)||(51446899-51446958)
[»] chr5 (4 HSPs)
chr5 (1-65)||(23334023-23334088)
chr5 (1-59)||(11796570-11796629)
chr5 (1-59)||(23325913-23325972)
chr5 (6-65)||(11797594-11797654)
[»] chr6 (1 HSPs)
chr6 (1-59)||(11722787-11722846)
[»] chr3 (4 HSPs)
chr3 (1-71)||(13620909-13620980)
chr3 (1-59)||(49379702-49379761)
chr3 (1-59)||(49381010-49381069)
chr3 (1-59)||(13622014-13622073)
[»] scaffold0114 (1 HSPs)
scaffold0114 (1-59)||(38541-38600)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52137486 - 52137262
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttagag-accaaatatccaattaaacctataatattctataaaaaacatgtatttcttcaactt 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||     
T  52137486 acaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatatccaattaagcctataatattctattaaaaacatgtatttcttcaactc 52137387  T
Q  100 attaattttataattttttctttccctacttctagtgatttgagttcccttccatttgatttactcacttactacaagtc--ctctttagatgttcaaac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||    
T  52137386 attaattttataattttttctttccttacttctagtgatttgagttcccttccttttgatttactcacttattacaaatcctctctttagatgttcaaac 52137287  T
Q  198 cacccaaatctaatttttactttct 222  Q
    |||||||||||||||||||||||||    
T  52137286 cacccaaatctaatttttactttct 52137262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26496365 - 26496435
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctataatat 70  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| |||||    
T  26496365 acaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaattaagcctaaaatat 26496435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 56156995 - 56156936
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  56156995 acaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaa 56156936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 56157552 - 56157616
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaaccta 64  Q
    ||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  56157552 acaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaattaagccta 56157616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20625560 - 20625619
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  20625560 acaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 20625619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8363445 - 8363509
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaaccta 64  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||| ||||||||| ||||    
T  8363445 acaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagccta 8363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36244823 - 36244887
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataatta-tttagagaccaaatatccaattaaaccta 64  Q
    ||||||||||||| |||||||||||| |||||||| ||| | |||||||||||||||||| ||||    
T  36244823 acaatttatgggatcaaaatgtaaactcataattattttggggaccaaatatccaattaagccta 36244887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20620199 - 20620140
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||  |||||||||    
T  20620199 acaacttatgggaccaaaatgtaaactcataattatttagaggaccaaaggtccaattaa 20620140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36243579 - 36243520
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  36243579 acaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 36243520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26495182 - 26495116
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctata 66  Q
    ||||||||| ||| |||||||||||| |||||||||||| | |||||||||| ||||||| ||||||    
T  26495182 acaatttataggagcaaaatgtaaactcataattatttaggggaccaaatattcaattaagcctata 26495116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41328279 - 41328208
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctataatatt 71  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||    
T  41328279 acaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcctataatatt 41328208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39981377 - 39981313
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaaccta 64  Q
    |||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||    
T  39981377 acaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaattaagccta 39981313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32653523 - 32653464
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattt-agagaccaaatatccaattaa 59  Q
    |||||||||| ||||||||||||||| ||||||||||| || ||| ||||||||||||||    
T  32653523 acaatttatgagaccaaaatgtaaacgcataattatttaagggactaaatatccaattaa 32653464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41329526 - 41329585
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  41329526 acaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 41329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 32653729 - 32653782
Alignment:
Q  7 tatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttaggggaccaaatgtccaattaa 32653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28611308 - 28611373
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctat 65  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  28611308 acaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaattaagcctat 28611373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8321301 - 8321362
Alignment:
Q  3 aatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacct 63  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||    
T  8321301 aatttatgggaccaaaatgtaaacgcataattatttagaggatcaaatgtccaattaaacct 8321362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28610082 - 28610017
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctat 65  Q
    |||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||| |||||    
T  28610082 acaatttatgggaccaaaatgtaaactcataattatttaggtgaccaaatgtccaattaagcctat 28610017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4921114 - 4921173
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||    
T  4921114 acaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaa 4921173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45699560 - 45699523
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45699560 acaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 4919885 - 4919828
Alignment:
Q  3 aatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||    
T  4919885 aatttatgggaccaaattgtaaatgcataattatttagaggaccaaatgtccaattaa 4919828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6955 - 6891
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaaccta 64  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  6955 acaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagccta 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9854935 - 9854999
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaaccta 64  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  9854935 acaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagccta 9854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9853627 - 9853589
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta 39  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  9853627 acaatttatgggaccaaaatataaacatataattattta 9853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 51445650 - 51445582
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctataat 68  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||| ||||    
T  51445650 acaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcctttaat 51445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14478326 - 14478267
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  14478326 acaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaattaa 14478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28050381 - 28050317
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattt-agagaccaaatatccaattaaaccta 64  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| || |||||| ||||    
T  28050381 acaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaattaagccta 28050317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28051663 - 28051727
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttagag-accaaatatccaattaaaccta 64  Q
    |||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||| ||||    
T  28051663 acaatttatgggaccaaaatgtaaactcataattatttagggaatcaaatatccaattaagccta 28051727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14479571 - 14479630
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    |||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  14479571 acaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 14479630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51446899 - 51446958
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  51446899 acaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaatgtccaattaa 51446958  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23334023 - 23334088
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctat 65  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||    
T  23334023 acaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctat 23334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11796629 - 11796570
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    |||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  11796629 acaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 11796570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23325972 - 23325913
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  23325972 acaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaa 23325913  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 11797594 - 11797654
Alignment:
Q  6 ttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctat 65  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||| ||||||||| |||||    
T  11797594 ttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcctat 11797654  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11722846 - 11722787
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||||    
T  11722846 acaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaattaa 11722787  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13620980 - 13620909
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaacctataatatt 71  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||| || |||||| |||||| ||||    
T  13620980 acaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaaattaagcctatattatt 13620909  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49379761 - 49379702
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 59  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||    
T  49379761 acaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaa 49379702  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49381010 - 49381069
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  49381010 acaatttataggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaa 49381069  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13622014 - 13622073
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  13622014 acaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 13622073  T

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Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38600 - 38541
Alignment:
Q  1 acaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 59  Q
    ||||||||||||||||||||| |||| |||||||||||| | |||||||| |||||||||    
T  38600 acaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaa 38541  T

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