View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_26 (Length: 240)
Name: NF1929_low_26
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6133796 - 6133568
Alignment:
| Q |
1 |
ctgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatatggcgc |
100 |
Q |
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| T |
6133796 |
ctgggtagatcttccacgagattcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatatggcgc |
6133697 |
T |
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| Q |
101 |
gaaatctcaaaggacccttccctctattgcactatcaacatgccgaattcagccgaccctaacactaaatgggggttactgaatctatgctaccgcgcag |
200 |
Q |
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| T |
6133696 |
gaaatctcaaaggaccattccctctatcgcactatcaacatgcccaattcagccgaccctaacactaaatgggagttactgaatctatgctaccgcgcag |
6133597 |
T |
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| Q |
201 |
ttgattacagcttcggccacataattcat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6133596 |
ttgattacagcttcggccacataattcat |
6133568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 6052114 - 6052255
Alignment:
| Q |
8 |
gatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatatggcgcgaaatct |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||| ||||| || ||||||||||||||| ||||||| |||||| |
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| T |
6052114 |
gatcttccacgagatgcagtcttatccattttccggaagctcgacgcaatcgatcttctcgttcgcgctcacaatgtttgcaccacatggcgcaaaatct |
6052213 |
T |
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| Q |
108 |
caaaggacccttccctctattgcactatcaacatgccgaatt |
149 |
Q |
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| T |
6052214 |
ccaaagacccttttctctttcgcaccattaacatgcccaatt |
6052255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 6037123 - 6037242
Alignment:
| Q |
8 |
gatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatatggcgcgaaatct |
107 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||| | | || |||||||| |||||| || || |||||||| | |||||| |||||| |
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| T |
6037123 |
gatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcccagggtttgcactacgtggcgcaaaatct |
6037222 |
T |
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| Q |
108 |
caaaggacccttccctctat |
127 |
Q |
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| T |
6037223 |
ccaaagaccctttcctctat |
6037242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 6045431 - 6045567
Alignment:
| Q |
8 |
gatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatatggcgcgaaatct |
107 |
Q |
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||||||||| ||||| || ||| ||||||||||||| ||| || | |||||| ||||| |||| || | || |||||||||| ||||||| |||||| |
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| T |
6045431 |
gatcttccatcagatgtcgtattaaccattttccggaaacttcacacgatcgatcttctccatcgcgctcataacgtttgcaccacatggcgcaaaatct |
6045530 |
T |
|
| Q |
108 |
caaaggacccttccctctattgcactatcaacatgcc |
144 |
Q |
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||||||| |||| ||||||| ||| ||| ||||||| |
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| T |
6045531 |
caaaggatcctttcctctatcacaccatcgacatgcc |
6045567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 6040872 - 6040936
Alignment:
| Q |
80 |
aatgtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgcc |
144 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||| |||| ||||||| ||| ||| ||||||| |
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| T |
6040872 |
aatgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatgcc |
6040936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 6052292 - 6052332
Alignment:
| Q |
186 |
tatgctaccgcgcagttgattacagcttcggccacataatt |
226 |
Q |
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||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
6052292 |
tatgccagcgcgcagttgattacagctgcggccacataatt |
6052332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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