View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1929_low_4 (Length: 587)
Name: NF1929_low_4
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 50551688 - 50552229
Alignment:
| Q |
19 |
atacaaacaatgta-gattttgatgacctattttcaaatttaattcccaannnnnnnaaaatgattgaacttttccccatacattttgaggctgaatttt |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50551688 |
atacaaacaatgtacgattttgatgacctattttcaaatttaattcccaatttttttaaaatgattgaacttttctccatacattttgaggctgaatttt |
50551787 |
T |
|
| Q |
118 |
agggaagctttaagttataccgtatgaaggaaggaactcgcatgcgaaagacaagaactcaaacgtggcatttgtgcaaagaaattagaaacaattttat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50551788 |
agggaagctttaagttataccgtatgaaggaa----ctcgcatgcgaaagacaagaactcaaacgtggcatttgtgcaaagaaattagaaataattttat |
50551883 |
T |
|
| Q |
218 |
atctacttgagtggttagctaagttccatannnnnnncaccatgcagttaagtcctcttaattattttgtgctctatttacgattttggttcctttgttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
50551884 |
atctacttgagtggttagctaagttccatatttttttcaccatgcagttaagtcctcttattt------tgctctatttacgattttggttcctttgttt |
50551977 |
T |
|
| Q |
318 |
ttaaatttacaaatctggtccttgaaatttaaaaatatcttggcatttcccccatttttatctccacgttttctttctctttttattgttgtgatgatga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50551978 |
ttaaatttacaaatctggtccttgaaatttaaaaatatcttggcatttcccctatttt-atctccacgttttctttctctttttattgttgtgatgatga |
50552076 |
T |
|
| Q |
418 |
cttggcataattttgtttctattccaaattttaaacgaactttccaacttaatcccaatataccttaaacagnnnnnnntatagattatccaagaaagaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50552077 |
cttggcataattttgtttctattccaaattttaaacgaactttccaacttaatcccaatataccttaaacagaaaaaaatatagattatccaagaaagaa |
50552176 |
T |
|
| Q |
518 |
aatataatcaattatattaacaagttggcacattgcaacagttcatctaaaat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50552177 |
aatataatcaattatattaacaagttggcacattgcaacagttcatctaaaat |
50552229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University