View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_5 (Length: 568)
Name: NF1929_low_5
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 183 - 556
Target Start/End: Complemental strand, 31264747 - 31264374
Alignment:
| Q |
183 |
tatataaactacccttaatcttaattctcaaacaatacgagactttaagatgtacataagacatggtttaggtaaccctaataacctagattgaaacatg |
282 |
Q |
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| T |
31264747 |
tatataaactacccttaatcttaattctcaaacaatacgagactttaagatgtacataagacatggtttaggtaaccctaataacctagattgaaacatg |
31264648 |
T |
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| Q |
283 |
tttgcataattaatctcggaatattggaagctgctttcaacctctcattagtaacttgatataggcaatgagaattttagattatggaaagtacccatac |
382 |
Q |
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| T |
31264647 |
tctgcataattaatctcggaatattggaagctgctttcaacctctcattagtaacttgatataggcaatgagaattttagattatggaaagtacccatac |
31264548 |
T |
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| Q |
383 |
actttacttaagaaagctccaaaaagacccattggggtccatttaaatgggacctatttctttcccattctgcatttacttacaacctcccttttgtaaa |
482 |
Q |
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| T |
31264547 |
actttacttaagaaagctccaaaaagacccattggggtccatttaaatgggacctatttcttacccattctgcatttacttacaacctcccttttgtaaa |
31264448 |
T |
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| Q |
483 |
actcctatattaattgctcatacaagcnnnnnnnnnnnngagccaatatttattgcgaatcattctttgatatt |
556 |
Q |
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| T |
31264447 |
actcctatattaattgctcatacaagctttttcttttttgagccaatatttattgcgaatcattctttgatatt |
31264374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 31264947 - 31264793
Alignment:
| Q |
16 |
caatgtggtactttaagatgtactagaacatttgccccctagttgagactatgggagagcactcctctataaatttaccatccgttcctccctcaagcac |
115 |
Q |
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| T |
31264947 |
caatgtggtactttaagatgtactggaacatttgccccctagttgagactatgggagagcactcctctataaatttaccatccgttccgccctcaagcac |
31264848 |
T |
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| Q |
116 |
atcaaatcgcgtttcaaggtattgtttactttgggcgtaagtccttcacggtttt |
170 |
Q |
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| T |
31264847 |
atcaaatcgcgtttcaaggtattgtttactttgggcgtaagtccttcacggtttt |
31264793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 31265491 - 31265374
Alignment:
| Q |
275 |
gaaacatgtttgcataattaatctcggaatattggaagctgctttcaacctctcattagtaacttgatataggcaatgagaattttagattatggaaagt |
374 |
Q |
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| T |
31265491 |
gaaacatgtttgcattattaatcttggcatattggaagtggctttcaacctttcgttagtaacttgatgtggacaatggaaattttagattgtggaaagt |
31265392 |
T |
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| Q |
375 |
acccatacactttactta |
392 |
Q |
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|||||| |||| |||||| |
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| T |
31265391 |
acccattcactctactta |
31265374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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