View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_6 (Length: 558)
Name: NF1929_low_6
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 157 - 410
Target Start/End: Original strand, 52138001 - 52138254
Alignment:
| Q |
157 |
ccttaaacgtctgcaaataaatagatgaacgcgactggatacgcggcggcgccgatggttgaacatgacccatatgtcaaggctggtttaatgtacatca |
256 |
Q |
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| T |
52138001 |
ccttaaacgtctgcaaataaagagatgaacgcgactggatacgcggcggcgtcgatggttgaacatgacccatatgtcaaggctggtttaatgtacatca |
52138100 |
T |
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| Q |
257 |
ttaagtgtcatatccattttcatcatttaattttctggtaatttaaagtaacgttgaagcatacccatatgtttgttttcttcaaactcatacccatttg |
356 |
Q |
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| T |
52138101 |
ttaagtgtcatatccattttcatcatttaattttctgttaatttaaagtaatgttgaagcatacccatatgtttgttttcttcaaactcatacccatttg |
52138200 |
T |
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| Q |
357 |
gtttgttgtttgttggagtttttatggtaaagtagtaagaatgggaggttacat |
410 |
Q |
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| T |
52138201 |
gtttgttgtttgttggagtttttatggtacagtagtaagaatgggaggttacat |
52138254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 52137932 - 52137977
Alignment:
| Q |
101 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatga |
146 |
Q |
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| T |
52137932 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatga |
52137977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 101 - 410
Target Start/End: Original strand, 9854045 - 9854348
Alignment:
| Q |
101 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatgagnnnnnnnnnccttaaacgtctgcaaataaatagatgaacgcgactggatacgc |
200 |
Q |
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| T |
9854045 |
gcatgaaatgttgatgaagagagacagcgcccataaaacataatgaaaaaaaaaaaccttaaacgtctgcaaataaagagatgaatgtgactggatacgt |
9854144 |
T |
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| Q |
201 |
ggcggcgccgatggttgaacatgacccatatgtcaaggctggtttaatgtacatcattaagtgtcat-atccattttcatcatttaattttctggtaatt |
299 |
Q |
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| T |
9854145 |
ggcggcgccgatggtttaacatgacccatatgtcaaggctggtttaatgtacatcattaagtgtcatgatccattttcatcatttaattttctggtaatt |
9854244 |
T |
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| Q |
300 |
taaagtaacgttgaagcatacccatatgtttgttttcttcaaactcatacccatttggtttgttgtttgttggagtttttatggtaaagtagtaagaatg |
399 |
Q |
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| T |
9854245 |
taaagtaacgttgaagcatacccatatgtttgttttcttcaaactcagacccatttg-------gtttgttggagtttttatggtacaatagtaagaatg |
9854337 |
T |
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| Q |
400 |
ggaggttacat |
410 |
Q |
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| T |
9854338 |
ggaggttacat |
9854348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 18819645 - 18819566
Alignment:
| Q |
330 |
tgttttcttcaaactcatacccatttggtttgttgtttgttggagtttttatggtaaagtagtaagaatgg-gaggttac |
408 |
Q |
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| T |
18819645 |
tgttttcttcaaactcatatcccttttgtttgctgtttgttgggggttttatggtgcagtactaagaatggtgaggttac |
18819566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 44230807 - 44230728
Alignment:
| Q |
331 |
gttttcttcaaactcatacccatttggtttgttgtttgttggagtttttatggtaaagtagtaagaatgg-gaggttacat |
410 |
Q |
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| T |
44230807 |
gttttcttcaaactcagatcccttttgtttgttgttt-ttgggggttttatggtgcagtactaagaatggtgaggttacat |
44230728 |
T |
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