View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_7 (Length: 529)
Name: NF1929_low_7
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 25378864 - 25378559
Alignment:
| Q |
20 |
agattctccctgatgttactgattgtggatttgttcattccaatccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttc |
119 |
Q |
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| T |
25378864 |
agattctccctgatgttactgattgtggatttgttcattccaatccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttc |
25378765 |
T |
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| Q |
120 |
gacacctatgatgaattaccttaattctgaccactaccttcctccaatgctgaatggaattcagaatcagaacaacgttgagttgcatcttgggaatatg |
219 |
Q |
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| T |
25378764 |
cacacctatgatgaattaccttaattctgaccactaccttcctccaatgctgaatggaattcagaatcagaacaacgtggagttgcatcttgggaatatg |
25378665 |
T |
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| Q |
220 |
aatttttcagaggggaagagagagatggatttgttggagttggtttcttctgctcagttttattagtgctgctgctggtgattctaaaatgatgaatcta |
319 |
Q |
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| T |
25378664 |
aatttttcagaggggaagagagagatggatttgttggagttggtttcttctgctcagttttattagtgctgctgctggtgattctaaaatgatgaatcta |
25378565 |
T |
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| Q |
320 |
tcattt |
325 |
Q |
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|||||| |
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| T |
25378564 |
tcattt |
25378559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 25378513 - 25378436
Alignment:
| Q |
370 |
cttccacgtttgataaaccatgcttccactatagcatggtagtatgcatttgacattaatttggattgtttagtcttg |
447 |
Q |
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| T |
25378513 |
cttccacgtttgataaaccatgcttccactatagcatggtagtatgcatttgacattaatttggattgtttagtcttg |
25378436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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