View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_8 (Length: 510)
Name: NF1929_low_8
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 126 - 494
Target Start/End: Original strand, 4097261 - 4097629
Alignment:
| Q |
126 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
225 |
Q |
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| T |
4097261 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
4097360 |
T |
|
| Q |
226 |
atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
325 |
Q |
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| T |
4097361 |
atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
4097460 |
T |
|
| Q |
326 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttc |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4097461 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtgacaaccattttc |
4097560 |
T |
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| Q |
426 |
tccgagggatcaaagctctatgtcactgctggcatgaagaaaacaaggagtagggaagcatatgatgtt |
494 |
Q |
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| T |
4097561 |
tccgagggatcaaagctctatgtgactgctggcatgaagaaaacaaggagtagggaagcatatgatgtt |
4097629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 4096095 - 4096183
Alignment:
| Q |
15 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa |
103 |
Q |
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| T |
4096095 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 150 - 497
Target Start/End: Complemental strand, 25796905 - 25796558
Alignment:
| Q |
150 |
tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacgaatttaacg |
249 |
Q |
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||||||||||| ||||| || |||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || | |
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| T |
25796905 |
tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacgagttcaatg |
25796806 |
T |
|
| Q |
250 |
aagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgtttcttcaccaccgttactggttatct |
349 |
Q |
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| T |
25796805 |
aagaaacaagaaagcttgttgtttacattcctcaagtgtgtgaagtaggctatagagattcatcagtcttgcgcttcacaaccactgtttctggttactt |
25796706 |
T |
|
| Q |
350 |
ggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttctccgagggatcaaagctctatgtc |
449 |
Q |
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|||||||||||||||||| || || ||||| |||||||| ||||| | | ||||| ||||| || |||||| ||||||||| ||||||| | || |
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| T |
25796705 |
ggagaaaggaaagctagctgatatagagggtatgaagaccaaagtgttggtgtgggtgaaagttaccgccatttcatccgagggaccaaagctgaacttc |
25796606 |
T |
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| Q |
450 |
actgctggcatgaagaaaacaaggagtagggaagcatatgatgtttct |
497 |
Q |
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| T |
25796605 |
actgctggcatgaagaaaacaaggaaaagggaagcttatgaagtttct |
25796558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 25797218 - 25797168
Alignment:
| Q |
16 |
attgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
66 |
Q |
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| T |
25797218 |
attgaaggaggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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