View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_low_9 (Length: 424)

Name: NF1929_low_9
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_low_9
NF1929_low_9
[»] chr2 (9 HSPs)
chr2 (1-408)||(43713562-43713971)
chr2 (1-405)||(43702738-43703145)
chr2 (1-275)||(43686238-43686512)
chr2 (1-273)||(43727464-43727742)
chr2 (1-44)||(43734934-43734977)
chr2 (359-401)||(8337490-8337532)
chr2 (331-371)||(3824446-3824486)
chr2 (344-388)||(33407401-33407445)
chr2 (344-388)||(43714137-43714181)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-257)||(24202-24458)
[»] chr1 (1 HSPs)
chr1 (1-257)||(25273264-25273520)
[»] chr4 (2 HSPs)
chr4 (1-98)||(2689838-2689935)
chr4 (344-388)||(42135017-42135061)
[»] chr7 (1 HSPs)
chr7 (344-401)||(42117536-42117593)
[»] chr6 (1 HSPs)
chr6 (343-388)||(30745116-30745161)
[»] chr5 (1 HSPs)
chr5 (332-408)||(35154197-35154273)
[»] chr3 (1 HSPs)
chr3 (332-388)||(52168459-52168515)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 43713562 - 43713971
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713562 atccaagatcatcttggttggagaattggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 43713661  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  43713662 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctataaaaacagaaaactttcattgccacctaaaacatctcctga 43713761  T
Q  201 attttaccatcacaagaaagactcagaccttgttgttccaactgataaactaaggtatatagaatcaaattactagctataccatctttttagcttttgt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713762 attttaccatcacaagaaagactcagaccttgttattccaactgataaactaaggtatatagaatcaaattactagctataccatctttttagcttttgt 43713861  T
Q  301 gtttcgtggttaattatagactaatgatgaatacttcctccaatctctattatcagagaaaattcacttttaaagttcattcaataaacga--tatatgt 398  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||||    
T  43713862 gtttcgtggttaaatatagactaatgatgaatacttcctccaatctctattataagagaaaattcacttttaaagttcattcaataaatgatgtatatgt 43713961  T
Q  399 agtttctaat 408  Q
    ||||||||||    
T  43713962 agtttctaat 43713971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 43702738 - 43703145
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  43702738 atccaagatcatcttggttggaaagttggttttggtgttccagcaatactcatgcttatatccactgtcttattctttcttgcttctcctctttatgtga 43702837  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    |||||| ||||| |||||||||  |||||||||||||||||||||||||||||||||  || |||||||||||| |||||||||| |||||||| |||||    
T  43702838 aaattaaacaaaaaaccagcttattcactggttttgcacaagtatctgttgctgcctacaagaacagaaaacttccattgccacctaaaacctctcctga 43702937  T
Q  201 attttaccatcacaagaaagactcagaccttgttgttccaactgataaactaaggtatatagaatcaaattactagctataccatctttttagcttttgt 300  Q
    ||||||||||||  | ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||| |    
T  43702938 attttaccatcaacaaaaagactcagaactcgttgttccaactgataaactaaggtatatagaatcgaatta----ctataccatctttttagcttttat 43703033  T
Q  301 gtttcgtggttaatt-------atagactaatgatgaatacttcctccaatctctattatcagagaaaattcacttttaaagttcattcaataaacgata 393  Q
    | |||||||||||||       |||||||||| |||||  |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||     
T  43703034 ggttcgtggttaattatgttcaatagactaataatgaactcttcctccaatctctattataagagaaaattcacatttaaagttcattcaataaacgatg 43703133  T
Q  394 tatgtagtttct 405  Q
    |||||| |||||    
T  43703134 tatgtaatttct 43703145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 43686238 - 43686512
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43686238 atccaagatcatcttggttggagaattggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 43686337  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43686338 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaagaacagaaaactttcattgccaccgaaaacctcacctga 43686437  T
Q  201 attttaccatcacaagaaagactcagaccttgttgttccaactgataaactaaggtatatagaatcaaattacta 275  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43686438 attttaccatcacaaaaaagactcagtccttgttgttccaactgataaactaaggtatatagaatcaaactacta 43686512  T

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Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 43727464 - 43727742
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||  ||||||||||||||||| |||||||| |    
T  43727464 atccaagagcatcttggttggaaaattggttttggtgttccagcagcactcatgcttttatctactatctgtttctttcttgcttctcctctttatgtca 43727563  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    | || ||| |||||||||||||| | |||||||||||||||||  ||  |||||| | ||| ||||||||||||  ||| ||||| || | ||||||| |    
T  43727564 agatcacaaaaagaaccagcttgattactggttttgcacaagtcactactgctgcttataagaacagaaaacttcaattaccacctaagaactcacctca 43727663  T
Q  201 attttaccatcacaagaaagactca------gaccttgttgttccaactgataaactaaggtatatagaatcaaattac 273  Q
    ||||||||||||||| || ||||||      || |||||| |||||||||||||||||||||||||||||| |||||||    
T  43727664 attttaccatcacaaaaaggactcagatcttgatcttgttattccaactgataaactaaggtatatagaattaaattac 43727742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43734934 - 43734977
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagc 44  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  43734934 atccaagatcatcttggttggaaactaggttttggtgttccagc 43734977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 8337490 - 8337532
Alignment:
Q  359 aaaattcacttttaaagttcattcaataaacgatatatgtagt 401  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  8337490 aaaatttacttttaaagttcattcaataaatgatatatgtagt 8337532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 3824486 - 3824446
Alignment:
Q  331 atacttcctccaatctctattatcagagaaaattcactttt 371  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  3824486 atacttcctccgatctctattataagagaaaattcactttt 3824446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 33407401 - 33407445
Alignment:
Q  344 tctctattatcagagaaaattcacttttaaagttcattcaataaa 388  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||    
T  33407401 tctctattataagagaaaatttactttttaagttcattcaataaa 33407445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 43714181 - 43714137
Alignment:
Q  344 tctctattatcagagaaaattcacttttaaagttcattcaataaa 388  Q
    |||||||||| ||||||||||||||||| |  |||||||||||||    
T  43714181 tctctattataagagaaaattcactttttagattcattcaataaa 43714137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24458 - 24202
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |||||||  | || ||||||||||||||||| |||||||| |    
T  24458 atccaagatcatcttggttggaaaattggttttggagttccagcagcactcatgtttttatccacattgttattctttcttgcttctcctctttatgtaa 24359  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    | |||  | ||||||||| |||| || || ||||||| |||||| |||||||| ||| ||| |||||||||||| |||| || || ||||  |||||| |    
T  24358 agattcaaaaaagaaccaacttgttcgctagttttgcgcaagtaactgttgcttcctgtaacaacagaaaacttacattaccgcctaaaaattcacctca 24259  T
Q  201 attttaccatcacaagaaagactcagaccttgttgttccaactgataaactaaggta 257  Q
    ||||||||||||||| || |||||| | ||||| |||||||||||||||||||||||    
T  24258 attttaccatcacaacaaggactcaaatcttgtggttccaactgataaactaaggta 24202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25273264 - 25273520
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgtga 100  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||| || | |||||  | || ||||||||||||||||| |||||||| |    
T  25273264 atccaagatcatcttggttggaaaattggttttggagttccagcagcactcatgtttttgtccacactgttattctttcttgcttctcctctttatgtaa 25273363  T
Q  101 aaattacacaaagaaccagcttgctcactggttttgcacaagtatctgttgctgcctttaaaaacagaaaactttcattgccaccgaaaacctcacctga 200  Q
    | |||  | ||||||||| |||| || || ||||||  ||||||   |||||| ||| ||  ||| |||||||| |||| || || ||||  |||||| |    
T  25273364 agattcaaaaaagaaccaacttgttcgctagttttgggcaagtaatcgttgcttcctatagcaaccgaaaacttccattaccgcctaaaaattcacctca 25273463  T
Q  201 attttaccatcacaagaaagactcagaccttgttgttccaactgataaactaaggta 257  Q
    ||||||||||||||| || |||||||| ||||| |||||||| ||||||||||||||    
T  25273464 attttaccatcacaacaaggactcagatcttgtagttccaacagataaactaaggta 25273520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2689838 - 2689935
Alignment:
Q  1 atccaagatcatcttggttggaaagttggttttggtgttccagcagcactcatgcttatatccactgtcttgttctttcttgcttctccactttatgt 98  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |  | |||||| |||| || |||||||||||||||||||||||    
T  2689838 atccaagatcatcttggatggaaacttggttttggtgttccagcagcacttatgttcttttccactttcttcttttttcttgcttctccactttatgt 2689935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 42135017 - 42135061
Alignment:
Q  344 tctctattatcagagaaaattcacttttaaagttcattcaataaa 388  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||||    
T  42135017 tctctattgtaagagaaaatacacttttaaagttcatttaataaa 42135061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 42117593 - 42117536
Alignment:
Q  344 tctctattatcagagaaaattcacttttaaagttcattcaataaacgatatatgtagt 401  Q
    |||||||||| ||||||||||||||||| | |||||||||||||| ||| ||| ||||    
T  42117593 tctctattatgagagaaaattcactttttaggttcattcaataaatgatgtatctagt 42117536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 30745116 - 30745161
Alignment:
Q  343 atctctattatcagagaaaattcacttttaaagttcattcaataaa 388  Q
    ||||||||||| ||||||||||||| ||| || |||||||||||||    
T  30745116 atctctattatgagagaaaattcacattttaaattcattcaataaa 30745161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 35154273 - 35154197
Alignment:
Q  332 tacttcctccaatctctattatcagagaaaattcacttttaaagttcattcaataaacgatatatgtagtttctaat 408  Q
    |||| ||||| ||||  ||||| |||||||||||| |||| |||||||||||| |||  || ||| |||||||||||    
T  35154273 tactccctccgatcttcattataagagaaaattcattttttaagttcattcaacaaataatgtatctagtttctaat 35154197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 52168515 - 52168459
Alignment:
Q  332 tacttcctccaatctctattatcagagaaaattcacttttaaagttcattcaataaa 388  Q
    ||||||||| |||  ||||||| |||||||||| ||||||||  |||||||||||||    
T  52168515 tacttcctctaatggctattataagagaaaatttacttttaagattcattcaataaa 52168459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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