View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19300_high_1 (Length: 562)

Name: NF19300_high_1
Description: NF19300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19300_high_1
NF19300_high_1
[»] chr3 (24 HSPs)
chr3 (11-547)||(18537539-18538077)
chr3 (11-209)||(10578457-10578657)
chr3 (11-209)||(15341344-15341544)
chr3 (11-209)||(17780243-17780443)
chr3 (11-209)||(19081544-19081744)
chr3 (11-209)||(15356711-15356911)
chr3 (14-209)||(1646624-1646821)
chr3 (11-209)||(15600009-15600209)
chr3 (11-209)||(15606554-15606754)
chr3 (11-209)||(10571691-10571892)
chr3 (14-209)||(17196876-17197073)
chr3 (11-209)||(16481583-16481783)
chr3 (11-209)||(32056170-32056370)
chr3 (46-209)||(17137260-17137426)
chr3 (11-209)||(6110971-6111182)
chr3 (14-209)||(13517689-13517888)
chr3 (90-209)||(13212210-13212331)
chr3 (438-533)||(18549064-18549162)
chr3 (91-209)||(23014548-23014668)
chr3 (25-132)||(16201180-16201288)
chr3 (441-535)||(18546966-18547062)
chr3 (440-518)||(18535876-18535957)
chr3 (438-500)||(18550156-18550221)
chr3 (11-62)||(13212331-13212382)
[»] scaffold0386 (5 HSPs)
scaffold0386 (214-547)||(2856-3191)
scaffold0386 (440-522)||(4783-4868)
scaffold0386 (441-522)||(9024-9108)
scaffold0386 (453-522)||(13401-13470)
scaffold0386 (471-547)||(14574-14649)
[»] chr8 (8 HSPs)
chr8 (11-209)||(6095028-6095228)
chr8 (11-209)||(21941547-21941749)
chr8 (11-209)||(22172367-22172567)
chr8 (14-209)||(15327105-15327302)
chr8 (14-209)||(15507474-15507671)
chr8 (11-209)||(28548929-28549130)
chr8 (92-209)||(24643504-24643624)
chr8 (12-132)||(29230378-29230495)
[»] chr4 (28 HSPs)
chr4 (11-207)||(10620433-10620631)
chr4 (11-207)||(10627515-10627713)
chr4 (11-209)||(8859074-8859274)
chr4 (14-209)||(4425743-4425940)
chr4 (14-209)||(8846085-8846282)
chr4 (11-209)||(28392267-28392467)
chr4 (11-209)||(19919631-19919831)
chr4 (11-209)||(19925860-19926060)
chr4 (11-206)||(869506-869703)
chr4 (11-209)||(5708219-5708419)
chr4 (11-209)||(18269955-18270155)
chr4 (11-209)||(5714854-5715055)
chr4 (11-209)||(55613590-55613790)
chr4 (11-209)||(18263094-18263294)
chr4 (11-209)||(26971345-26971547)
chr4 (20-169)||(5667202-5667354)
chr4 (453-512)||(5685649-5685708)
chr4 (11-72)||(26964592-26964653)
chr4 (438-510)||(5674897-5674973)
chr4 (21-132)||(47388065-47388176)
chr4 (164-209)||(5667385-5667430)
chr4 (438-492)||(5615961-5616018)
chr4 (155-209)||(10676851-10676905)
chr4 (155-209)||(10890491-10890545)
chr4 (97-191)||(35224456-35224553)
chr4 (455-500)||(5691850-5691895)
chr4 (160-209)||(47388244-47388294)
chr4 (492-538)||(9287654-9287700)
[»] chr1 (9 HSPs)
chr1 (11-209)||(18531638-18531839)
chr1 (11-209)||(18252912-18253112)
chr1 (11-211)||(27130509-27130711)
chr1 (14-209)||(27309681-27309877)
chr1 (14-209)||(16358163-16358360)
chr1 (22-209)||(9076013-9076202)
chr1 (37-132)||(36815748-36815843)
chr1 (160-209)||(36815911-36815960)
chr1 (40-72)||(27276691-27276723)
[»] scaffold0390 (2 HSPs)
scaffold0390 (11-209)||(6034-6234)
scaffold0390 (11-209)||(13050-13250)
[»] scaffold0061 (1 HSPs)
scaffold0061 (11-209)||(5321-5521)
[»] chr6 (13 HSPs)
chr6 (11-209)||(17690565-17690765)
chr6 (11-209)||(27380352-27380552)
chr6 (11-209)||(27470735-27470935)
chr6 (11-209)||(29309772-29309972)
chr6 (11-209)||(29316731-29316931)
chr6 (11-192)||(27297558-27297741)
chr6 (21-209)||(11652580-11652770)
chr6 (14-209)||(17683585-17683782)
chr6 (14-209)||(25536292-25536490)
chr6 (129-209)||(16558717-16558797)
chr6 (164-209)||(28755534-28755579)
chr6 (92-172)||(16393660-16393743)
chr6 (93-132)||(18336553-18336592)
[»] scaffold0234 (2 HSPs)
scaffold0234 (11-209)||(10337-10537)
scaffold0234 (11-209)||(1444-1646)
[»] chr7 (14 HSPs)
chr7 (12-209)||(11535188-11535387)
chr7 (12-209)||(11542106-11542305)
chr7 (11-209)||(29328666-29328870)
chr7 (12-209)||(12739424-12739623)
chr7 (11-209)||(18561913-18562115)
chr7 (46-209)||(24850719-24850884)
chr7 (12-209)||(12751741-12751940)
chr7 (11-209)||(11557198-11557392)
chr7 (24-207)||(15153352-15153536)
chr7 (11-84)||(2653113-2653186)
chr7 (11-87)||(9978834-9978910)
chr7 (38-172)||(13393080-13393217)
chr7 (155-209)||(13393006-13393060)
chr7 (103-151)||(9978782-9978832)
[»] scaffold1199 (1 HSPs)
scaffold1199 (11-207)||(4-207)
[»] chr5 (5 HSPs)
chr5 (12-209)||(19706298-19706497)
chr5 (11-209)||(19713625-19713823)
chr5 (11-209)||(24694585-24694783)
chr5 (11-209)||(24701349-24701547)
chr5 (20-209)||(18565594-18565791)
[»] chr2 (4 HSPs)
chr2 (24-209)||(21329380-21329569)
chr2 (14-209)||(22790961-22791158)
chr2 (13-73)||(41664786-41664846)
chr2 (159-209)||(18620681-18620730)
[»] scaffold0433 (1 HSPs)
scaffold0433 (11-209)||(7989-8190)
[»] scaffold0008 (1 HSPs)
scaffold0008 (14-209)||(229515-229716)
[»] scaffold0220 (1 HSPs)
scaffold0220 (11-209)||(19194-19395)
[»] scaffold0063 (1 HSPs)
scaffold0063 (14-209)||(6404-6607)
[»] scaffold0032 (1 HSPs)
scaffold0032 (11-132)||(107372-107494)
[»] scaffold0502 (1 HSPs)
scaffold0502 (11-132)||(10-128)


Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 18538077 - 18537539
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18538077 cagagagaccaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttcataatgcttcagcacaagagt 18537978  T
Q  111 tctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||||||  ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  18537977 tctatttatagaatcacttgtgcggtcagcaagacaacacttaactacactgtaccttacggtgaaccgcgtttctctattttacttaaattaaataata 18537878  T
Q  209 atggatctttaaaaacatgcacaaataaatatatctttttatttcaattcnnnnnnncagtataaatacgttgtttaggttataatggatcttaggtaaa 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||       |||||||||| ||||||||||||||||||||||||||||||||    
T  18537877 atggatctttaaaaacatgcacaaataaatatatatttttattttaattcaaaaaaacagtataaatgcgttgtttaggttataatggatcttaggtaaa 18537778  T
Q  309 aggtggaataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18537777 aggtggaataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagg 18537678  T
Q  409 gactagagaattgacattacatgacaattgatcatgtaataaacataatcaaaataattgaatacaattttactaacttgtcatcctttaaataatttta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18537677 gactagagaattgacattacatgacaattgatcatgtaataaacataaccaaaataattgaatacaattttactaacttgtcatcctttaaataatttta 18537578  T
Q  509 ttatatttttaacctttcatgagagtaaagtgaataaat 547  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18537577 ttatatttttaacctttcatgagagtaaagtgaataaat 18537539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 10578457 - 10578657
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  10578457 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 10578556  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10578557 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataata 10578656  T
Q  209 a 209  Q
    |    
T  10578657 a 10578657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 15341344 - 15341544
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  15341344 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 15341443  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15341444 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 15341543  T
Q  209 a 209  Q
    |    
T  15341544 a 15341544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 17780243 - 17780443
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  17780243 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 17780342  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17780343 tctatttatagaatcacttgtgtggtcaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 17780442  T
Q  209 a 209  Q
    |    
T  17780443 a 17780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 19081544 - 19081744
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  19081544 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 19081643  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19081644 tctatttatagaatcacttgtgtggtcaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 19081743  T
Q  209 a 209  Q
    |    
T  19081744 a 19081744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 15356711 - 15356911
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  15356711 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 15356810  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || |||||||||| |||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15356811 tctatttatagaatcacttgtgtggacaacaagacaacaattaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 15356910  T
Q  209 a 209  Q
    |    
T  15356911 a 15356911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 1646624 - 1646821
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||  ||  |||||||||| |||||| |||||    
T  1646624 agagaacaaggtttagagagcgacgactagggtttcacaacttttgttaattaggttaagcactcacaaaaaattagtaatgcttcaacacaagggttct 1646723  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1646724 atttatagaatcacttgtgtggtcagcaagacaacacttaaatgcaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 1646821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 15600009 - 15600209
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||    
T  15600009 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggt 15600108  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15600109 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctatttttcgtaaattaaataata 15600208  T
Q  209 a 209  Q
    |    
T  15600209 a 15600209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 15606554 - 15606754
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||    
T  15606554 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggt 15606653  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15606654 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctatttttcgtaaattaaataata 15606753  T
Q  209 a 209  Q
    |    
T  15606754 a 15606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 10571691 - 10571892
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  10571691 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 10571790  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  ||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  10571791 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtgaaccgcgtttctctattttttggtaaattaaataat 10571890  T
Q  208 aa 209  Q
    ||    
T  10571891 aa 10571892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 17196876 - 17197073
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||  |||||| |||  |||||||||| |||||| |||||    
T  17196876 agagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaagttaagcacaaacaaaaagttagtaatgcttcaacacaagggttct 17196975  T
Q  114 atttatagaatcacttg--tggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||  |||||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17196976 atttatagaatcacttgtctggtcagcaagacaacacttaaatacacagtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17197073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 16481583 - 16481783
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||  | ||||||||||||||||||||||||||| ||||||||||| ||   |||||||||| |||||| ||    
T  16481583 cagagagaacaaggtttagagagcggcggctgag-tttcacaacttttgtgaattaggttaagcactcacaaaaagtaagtaatgcttcaacacaagggt 16481681  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctc-tatttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16481682 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctcttatttttcgtaaattaaataat 16481781  T
Q  208 aa 209  Q
    ||    
T  16481782 aa 16481783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32056170 - 32056370
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||| || |||||||| |||  |||||||| | |||||| ||    
T  32056170 cagagagaacaaggtttagagagcggcggctagggcttcacaacttttgtgaattaggttaagcaatcacaaaaagttagtaatgcttgaacacaagggt 32056269  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||| ||||||||||||||||||  ||||  ||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  32056270 tctatttatagaatcacttgtgtgatcagcaagacaacacttaaatacactgtaccttacagtggactgcgtttctctatttttcgtaaattaaataata 32056369  T
Q  209 a 209  Q
    |    
T  32056370 a 32056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 17137426 - 17137260
Alignment:
Q  46 tttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcactt---gtggtcagcaaga 142  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||| ||||||||   |||||||||||||    
T  17137426 tttcacaacttttgttaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttataaaatcactttgtgtggtcagcaaga 17137327  T
Q  143 caacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17137326 caacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17137260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 6111182 - 6110971
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcat-----------aatgcttc 99  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |           ||||||||    
T  6111182 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagtttttttttttttggtaatgcttc 6111083  T
Q  100 agcacaagagttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaa 197  Q
    | |||||| ||||||||||||||||||||||||  | || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  6111082 aacacaagggttctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaa 6110983  T
Q  198 attaaataataa 209  Q
    ||||||||||||    
T  6110982 attaaataataa 6110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 13517888 - 13517689
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||  | |||  | |||||||| |||||| |||||    
T  13517888 agagaacaatgtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacattaagttagtcatgcttcaacacaagggttct 13517789  T
Q  114 atttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctat--ttttcgtaaattaaataataa 209  Q
    ||||||||||  |||||||  |||||||| ||||||||||  |||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  13517788 atttatagaaatacttgtgtggtcagcaaaacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttttcgtaaattaaataataa 13517689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 13212331 - 13212210
Alignment:
Q  90 ataatgcttcagcacaagagttctatttatagaatcacttgtggt--cagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta 187  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    || ||||||||||||||  |||| |||||||||||||| ||||||||||||||    
T  13212331 ataatgcttcaacacaagggttctatttatagaatcacttgtgtgaacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctcta 13212232  T
Q  188 tttttcgtaaattaaataataa 209  Q
    ||||||||||||||||||||||    
T  13212231 tttttcgtaaattaaataataa 13212210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 438 - 533
Target Start/End: Complemental strand, 18549162 - 18549064
Alignment:
Q  438 gatcatgtaataaacataat---caaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagag 533  Q
    ||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  18549162 gatcatgtaataaacataataatcaaaataattaaatacaattttactaacttgtcatcctttaaataattttattattttttaaacctttcataagag 18549064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 23014548 - 23014668
Alignment:
Q  91 taatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctat 188  Q
    ||||||||||||||||| ||||||||||||||| ||||||||  ||||||||   | ||||||  |||||| |||||||| ||  || ||||||||||||    
T  23014548 taatgcttcagcacaagggttctatttatagaaccacttgtgtggtcagcaaccaaccacttaaatacatcataccttacagtagactgcgtttctctat 23014647  T
Q  189 ttttcgtaaattaaataataa 209  Q
    |||||||||||||||||||||    
T  23014648 ttttcgtaaattaaataataa 23014668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 16201288 - 16201180
Alignment:
Q  25 tttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacac-tcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 123  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||  ||| ||  ||||| |||||||||||| |||| ||||||||||    
T  16201288 tttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttcaacaaaagtctataatacttcagcacaagggttcaatttatagaa 16201189  T
Q  124 tcacttgtg 132  Q
    |||||||||    
T  16201188 tcacttgtg 16201180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 441 - 535
Target Start/End: Complemental strand, 18547062 - 18546966
Alignment:
Q  441 catgtaataaacataat---caaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagta 535  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||  ||||||||||| |||||||||    
T  18547062 catgtaataaacataataatcaaaataattgaatacagttttactaatttatcatcatttaaataattttattattcttttaaccttt-atgagagta 18546966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 518
Target Start/End: Complemental strand, 18535957 - 18535876
Alignment:
Q  440 tcatgtaataaacataatca---aaataattgaatacaattttactaacttgtcatcctttaaataattttattatattttt 518  Q
    |||||||||||||||||| |   ||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||    
T  18535957 tcatgtaataaacataataataaaaataattgaatataattttaataacttgtcatcctttaaatatttttattattttttt 18535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 500
Target Start/End: Complemental strand, 18550221 - 18550156
Alignment:
Q  438 gatcatgtaataaacat---aatcaaaataattgaatacaattttactaacttgtcatcctttaaa 500  Q
    |||||||||||||||||   |||||||||| || |||||||||||||||||||||| |||||||||    
T  18550221 gatcatgtaataaacatgataatcaaaatatttaaatacaattttactaacttgtcttcctttaaa 18550156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 13212382 - 13212331
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtga 62  Q
    |||||||| ||| |||||||||||| |||||||| |||||||||||||||||    
T  13212382 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtga 13212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 214 - 547
Target Start/End: Original strand, 2856 - 3191
Alignment:
Q  214 tctttaaaaacatgcacaaataaatatatcttttt-atttcaattcnnnnnnn-cagtataaatacgttgtttaggttataatggatcttaggtaaaagg 311  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||         || ||||||| ||||||||||||||||||||| |||||||||||||    
T  2856 tctttaaaaacatgcacaaataaatatatattttttattttaattaaaaaaaaacactataaatgcgttgtttaggttataatggagcttaggtaaaagg 2955  T
Q  312 tggaataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagggac 411  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  2956 tggaataattcgaaaagtaggtttcacaaaaaaattggaggtaagcatcttc---ctggtctaacaaaacattcctacaccacatgttaacttaagggac 3052  T
Q  412 tagagaattgacattacatgacaattgatcatgtaataaac---ataatcaaaataattgaatacaattttactaacttgtcatcctttaaataatttta 508  Q
    |||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3053 tagagaattgacattatatgacaattgatcatgtaataaacataataatcaaaataattgaatacaattttactaacttgtcatcctttaaataatttta 3152  T
Q  509 ttatatttttaacctttcatgagagtaaagtgaataaat 547  Q
    || ||||||||||||||||| ||||||||||||||||||    
T  3153 ttttatttttaacctttcatcagagtaaagtgaataaat 3191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 4783 - 4868
Alignment:
Q  440 tcatgtaataaacataatca---aaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 522  Q
    |||||||||||||||||| |   ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  4783 tcatgtaataaacataataataaaaataattgaatataattttaataacttgtcatcctttaaataattttattatttttttaacc 4868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 522
Target Start/End: Original strand, 9024 - 9108
Alignment:
Q  441 catgtaataaacataa---tcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 522  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||||||    
T  9024 catgtaataaacataataatcaaaataattgaatacaactttactaagttgtcatcctttaaatagttttattattttcttaacc 9108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 13401 - 13470
Alignment:
Q  453 ataatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 522  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| || ||||||    
T  13401 ataatcaaaataattgaatataattttactaacttgttatcttttaaataattttattattttcttaacc 13470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 547
Target Start/End: Original strand, 14574 - 14649
Alignment:
Q  471 tacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagtaaagtgaataaat 547  Q
    ||||| ||||||||||||||||| |||||||| |||| || | |||||| |||||||||||||||||||||| ||||    
T  14574 tacaactttactaacttgtcatcatttaaatatttttttttttttttta-cctttcatgagagtaaagtgaaaaaat 14649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 6095228 - 6095028
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  6095228 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 6095129  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6095128 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 6095029  T
Q  209 a 209  Q
    |    
T  6095028 a 6095028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 21941749 - 21941547
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa--ggttcataatgcttcagcacaaga 108  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||  ||||  |||||||||| ||||||     
T  21941749 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagggttagtaatgcttcaacacaagg 21941650  T
Q  109 gttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataa 206  Q
    ||||||||||||||||||||||||  | || ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941649 gttctatttatagaatcacttgtgtggacaacaagacaacacttaaatacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataa 21941550  T
Q  207 taa 209  Q
    |||    
T  21941549 taa 21941547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 22172567 - 22172367
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||  |||||||||| |||||| ||    
T  22172567 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaagattagtaatgcttcaacacaagggt 22172468  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22172467 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 22172368  T
Q  209 a 209  Q
    |    
T  22172367 a 22172367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 15327302 - 15327105
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||| ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||  |||||    
T  15327302 agagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgcttcaacacaaaggttct 15327203  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  15327202 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataataa 15327105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 15507671 - 15507474
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||| ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||  |||||    
T  15507671 agagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgcttcaacacaaaggttct 15507572  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  15507571 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataataa 15507474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 28549130 - 28548929
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaactttt-gtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagag 109  Q
    |||||||| | |||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||| |||  | |||||||| |||||| |    
T  28549130 cagagagaaccaggtttagagagcggcggctagggtttcacaactttttgtgaattaggttaagcactcacaaaatgttagtcatgcttcaacacaaggg 28549031  T
Q  110 ttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||||||||||||| ||  |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28549030 ttctatttatagaatcacttatgtagtcagcaagacaacacttaaatacatcgtaccttacggtggaccgcgtttctctatttttcgtaaatcaaataat 28548931  T
Q  208 aa 209  Q
    ||    
T  28548930 aa 28548929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 24643624 - 24643504
Alignment:
Q  92 aatgcttcagcacaagagttctatttatagaatcact--tgtggtcagcaagacaa-cacttagctacatcgtaccttacggtgaaccgcgtttctctat 188  Q
    |||||||||||| ||| ||||||||||||||| ||||  |||| ||| |||| ||| ||||||  |||| ||||| |||||||| ||| | || ||||||    
T  24643624 aatgcttcagcataagggttctatttatagaaccacttgtgtgatcaacaagccaatcacttaaatacaccgtactttacggtggacctcattactctat 24643525  T
Q  189 ttttcgtaaattaaataataa 209  Q
    ||||| |||||||||||||||    
T  24643524 ttttcttaaattaaataataa 24643504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 29230495 - 29230378
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacac--tcacaaaaggttca-taatgcttcagcacaaga 108  Q
    ||||||| |||||||||  ||||| |||||||| ||||||||||||||| | ||||||||| |||  | |||||||  ||| |||||||||| |||        
T  29230495 agagagaacaaggtttaaggagcggcggctagggtttcacaacttttgttagttaggttaagcactttaacaaaag--tcagtaatgcttcatcac---- 29230402  T
Q  109 gttctatttatagaatcacttgtg 132  Q
    ||||||||||||||||||||||||    
T  29230401 gttctatttatagaatcacttgtg 29230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 10620433 - 10620631
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||   |||||||||| |||||| ||    
T  10620433 cagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagtcagtaatgcttcaacacaagggt 10620532  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10620533 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 10620631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 10627515 - 10627713
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||   |||||||||| |||||| ||    
T  10627515 cagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagtcagtaatgcttcaacacaagggt 10627614  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10627615 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 10627713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 8859274 - 8859074
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  8859274 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 8859175  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8859174 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 8859075  T
Q  209 a 209  Q
    |    
T  8859074 a 8859074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 4425743 - 4425940
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| |||||    
T  4425743 agagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacacaagggttct 4425842  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  4425843 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcataaattaaataataa 4425940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 8846282 - 8846085
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||||||||  ||||| |||||    
T  8846282 agagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaatacaagggttct 8846183  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8846182 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacatcgtaccttacgttggaccgcgtttctctatttttcgtaaattaaataataa 8846085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 28392267 - 28392467
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  |||||||| |||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  28392267 cagagagaagaaggtttaaagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 28392366  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28392367 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 28392466  T
Q  209 a 209  Q
    |    
T  28392467 a 28392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 19919631 - 19919831
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |  |||||||||| |||||| ||    
T  19919631 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggtagtaatgcttcaacacaagggt 19919730  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19919731 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtatcttacggtgaaccgcgtttctctatttttcgtaaattaaataata 19919830  T
Q  209 a 209  Q
    |    
T  19919831 a 19919831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 19925860 - 19926060
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |  |||||||||| |||||| ||    
T  19925860 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggtagtaatgcttcaacacaagggt 19925959  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19925960 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtatcttacggtgaaccgcgtttctctatttttcgtaaattaaataata 19926059  T
Q  209 a 209  Q
    |    
T  19926060 a 19926060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 869703 - 869506
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| | | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| ||    
T  869703 cagagagaactatgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgtttcaacacaagggt 869604  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataa 206  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  869603 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataa 869506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 5708419 - 5708219
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| | | |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| ||    
T  5708419 cagagagaactacgtttagagagcagcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgtttcaacacaagggt 5708320  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5708319 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 5708220  T
Q  209 a 209  Q
    |    
T  5708219 a 5708219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 18270155 - 18269955
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| ||    
T  18270155 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggt 18270056  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18270055 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaata 18269956  T
Q  209 a 209  Q
    |    
T  18269955 a 18269955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 5715055 - 5714854
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactca-caaaaggttcataatgcttcagcacaagag 109  Q
    |||||||| | | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||  ||||| |||| |||||| |    
T  5715055 cagagagaactacgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaacaaaaggttagtaatgtttcaacacaaggg 5714956  T
Q  110 ttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||||||||||||||||  | || ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5714955 ttctatttatagaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 5714856  T
Q  208 aa 209  Q
    ||    
T  5714855 aa 5714854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 55613790 - 55613590
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||  | ||||||||||||||||||||||||||| ||||||||||| ||   |||||||||| |||||| ||    
T  55613790 cagagagaacaaggtttagagagcggcggctgag-tttcacaacttttgtgaattaggttaagcactcacaaaaagtaagtaatgcttcaacacaagggt 55613692  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctc-tatttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55613691 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctcttatttttcgtaaattaaataat 55613592  T
Q  208 aa 209  Q
    ||    
T  55613591 aa 55613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 18263294 - 18263094
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| ||    
T  18263294 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggt 18263195  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  ||||  ||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18263194 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaata 18263095  T
Q  209 a 209  Q
    |    
T  18263094 a 18263094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 26971547 - 26971345
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||    
T  26971547 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggt 26971448  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcg-tttctcta-tttttcgtaaattaaataa 206  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||| |||||||| |||||| ||||||||||||    
T  26971447 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgttttctctattttttcctaaattaaataa 26971348  T
Q  207 taa 209  Q
    |||    
T  26971347 taa 26971345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 5667202 - 5667354
Alignment:
Q  20 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 119  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||  |   ||||||||||||||||| |||||||||||    
T  5667202 caaggtttagagagcggcggctagggtttcacaacttttgtgaataaggttaagcactcacaaaaaatatgtaatgcttcagcacaagggttctatttat 5667301  T
Q  120 agaatcact--tgtggtcagcaagacaa-cacttagctacatcgtaccttacg 169  Q
    |||||||||  ||||||||||||| ||| ||||||  |||| |||||||||||    
T  5667302 agaatcacttgtgtggtcagcaagccaagcacttaagtacaccgtaccttacg 5667354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 5685708 - 5685649
Alignment:
Q  453 ataatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattat 512  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5685708 ataatcaaaataattgaataaaattttactaacttgtcatcctttaaataattttattat 5685649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 26964653 - 26964592
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaa 72  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  26964653 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaa 26964592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 5674973 - 5674897
Alignment:
Q  438 gatcatgtaataaa---cataatcaaaataattgaatacaattttactaacttgt-catcctttaaataattttatt 510  Q
    ||||||||||||||    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  5674973 gatcatgtaataaatataataatcaaaataattaaatacaattttactaacttgtacatcctttaaataattttatt 5674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 47388065 - 47388176
Alignment:
Q  21 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 120  Q
    ||||||||||||| | |||||||| ||||||  ||||||||||||||||||| ||||||  ||| ||   ||||| ||||||||||  |||||||||||     
T  47388065 aaggtttagagagtggcggctagggtttcacgccttttgtgaattaggttaagcactcaacaaaagtcagtaatgtttcagcacaatggttctatttatc 47388164  T
Q  121 gaatcacttgtg 132  Q
     |||||||||||    
T  47388165 aaatcacttgtg 47388176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 5667385 - 5667430
Alignment:
Q  164 cttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5667385 cttacggtggaccgcgtttctctatttttcgtaaattaaataataa 5667430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 492
Target Start/End: Original strand, 5615961 - 5616018
Alignment:
Q  438 gatcatgtaataaacataa---tcaaaataattgaatacaattttactaacttgtcat 492  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||    
T  5615961 gatcatgtaataaacataataatcaaaataattgaatacaattttactaacttctcat 5616018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 10676851 - 10676905
Alignment:
Q  155 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  10676851 acattgtaccttacggtggaccgcatttctctatttttcataaattaaataataa 10676905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 10890491 - 10890545
Alignment:
Q  155 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  10890491 acattgtaccttacggtggaccgcatttctctatttttcataaattaaataataa 10890545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 35224553 - 35224456
Alignment:
Q  97 ttcagcacaagagttctatttatagaatcacttgtgg--tcagcaagacaa-cacttagctacatcgtaccttacggtgaaccgcgtttctctatttt 191  Q
    ||||||||||| ||||||||||||||| ||||||||   |||  ||| ||| ||||||  |||| |||||||||||||| ||||||||||||||||||    
T  35224553 ttcagcacaagggttctatttatagaaccacttgtgtgctcataaagtcaagcacttaagtacaccgtaccttacggtggaccgcgtttctctatttt 35224456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 5691895 - 5691850
Alignment:
Q  455 aatcaaaataattgaatacaattttactaacttgtcatcctttaaa 500  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5691895 aatcaaaataattgaatacaattctactaccttgtcatcctttaaa 5691850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 47388244 - 47388294
Alignment:
Q  160 gtaccttacggtgaaccgcgttt-ctctatttttcgtaaattaaataataa 209  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  47388244 gtaccttacggtggaccgcgttttctctattttttgtaaattaaataataa 47388294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 538
Target Start/End: Original strand, 9287654 - 9287700
Alignment:
Q  492 tcctttaaataattttattatatttttaacctttcatgagagtaaag 538  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||||    
T  9287654 tcctttaaataattgtattatgtttttaaccttttgtgagagtaaag 9287700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 18531638 - 18531839
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa-ggttcataatgcttcagcacaagag 109  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| |    
T  18531638 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggttcgtaatgcttcaacacaaggg 18531737  T
Q  110 ttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||||||||||||||||  |||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18531738 ttctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 18531837  T
Q  208 aa 209  Q
    ||    
T  18531838 aa 18531839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 18253112 - 18252912
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  18253112 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 18253013  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18253012 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 18252913  T
Q  209 a 209  Q
    |    
T  18252912 a 18252912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 27130509 - 27130711
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| ||    
T  27130509 cagagagaacaaggtttagagagcggaggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacacaagggt 27130608  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27130609 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataata 27130708  T
Q  209 atg 211  Q
    |||    
T  27130709 atg 27130711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 27309681 - 27309877
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |||  |||||||||| |||||| |||||    
T  27309681 agagaacaaggtttagagagcggcggctagggtttcacaacttttgttaattaggttaagcactcacaaaaagttagtaatgcttcaacacaag-gttct 27309779  T
Q  114 atttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||||  || ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  27309780 atttatagaatcacttgtgtggttagcaagacaacacttaaatacatcgtaccttacggtggaccgcgtttctctatttttcataaattaaataataa 27309877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 16358163 - 16358360
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| ||| |||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||    
T  16358163 agagaacaacgtttagagagcgacagctatggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttct 16358262  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||||||| |  |||||||||||||||||||||||  ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  16358263 atttatagaatcatttgtgtggtcagcaagacaacacttaaatacattgtaccttacggtggaccgcgtttccctatttttcgtaaattaaataataa 16358360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 9076013 - 9076202
Alignment:
Q  22 aggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatag 121  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||    
T  9076013 aggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatag 9076112  T
Q  122 aatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||  |  |||||||||||||||||||||||  |||| | |||||||||||| | |||||||||||||||||| |||||||||||||||    
T  9076113 aatcgtttgtgtggtcagcaagacaacacttaaatacagcataccttacggtggatcgcgtttctctatttttcataaattaaataataa 9076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 36815748 - 36815843
Alignment:
Q  37 cggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcacttgtg 132  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| | ||   | |||||||| |||||| ||||||||||||||||||||||||    
T  36815748 cggctagggtttcacaacttttgtgaattaggttaagcactcacaagaagtctgtcatgcttcaacacaagggttctatttatagaatcacttgtg 36815843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 36815911 - 36815960
Alignment:
Q  160 gtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  36815911 gtaccttatggtggaccgcatttctctatttttcgtaaattaaataataa 36815960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 27276691 - 27276723
Alignment:
Q  40 ctaggatttcacaacttttgtgaattaggttaa 72  Q
    ||||| |||||||||||||||||||||||||||    
T  27276691 ctagggtttcacaacttttgtgaattaggttaa 27276723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 6034 - 6234
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  6034 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 6133  T
Q  111 tctatttatagaatcacttg--tggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||||  ||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6134 tctatttatagaatcacttgtatggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataata 6233  T
Q  209 a 209  Q
    |    
T  6234 a 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 13050 - 13250
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  13050 cagagagaacaaggtttagagagcggcggctagggtttcacaactgttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 13149  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13150 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataata 13249  T
Q  209 a 209  Q
    |    
T  13250 a 13250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 5321 - 5521
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  5321 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 5420  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5421 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 5520  T
Q  209 a 209  Q
    |    
T  5521 a 5521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 17690565 - 17690765
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  17690565 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 17690664  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17690665 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 17690764  T
Q  209 a 209  Q
    |    
T  17690765 a 17690765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 27380352 - 27380552
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||| |||||| ||    
T  27380352 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggttaataatgtttcaacacaagggt 27380451  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27380452 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtactttacggtggaccgcgtttctctatttttcgtaaattaaataata 27380551  T
Q  209 a 209  Q
    |    
T  27380552 a 27380552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 27470735 - 27470935
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||| |||||| ||    
T  27470735 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggttaataatgtttcaacacaagggt 27470834  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27470835 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtactttacggtggaccgcgtttctctatttttcgtaaattaaataata 27470934  T
Q  209 a 209  Q
    |    
T  27470935 a 27470935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 29309972 - 29309772
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||| |||||| ||    
T  29309972 cagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagttagtaatgcttcaacacaagggt 29309873  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29309872 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcatttctctatttttcgtaaattaaataata 29309773  T
Q  209 a 209  Q
    |    
T  29309772 a 29309772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 29316931 - 29316731
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||| |||||| ||    
T  29316931 cagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagttagtaatgcttcaacacaagggt 29316832  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  29316831 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaatcgcatttctctatttttcgtaaattaaataata 29316732  T
Q  209 a 209  Q
    |    
T  29316731 a 29316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 27297741 - 27297558
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  27297741 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 27297642  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctattttt 192  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  27297641 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctattttt 27297558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 11652770 - 11652580
Alignment:
Q  21 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 120  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||| | || ||||||||  ||  |||||||||| |||||| ||||||||||||    
T  11652770 aaggtttagagagcggcatctagggtttcacaacttttgtgaattaggttcagcattcacaaaaaattagtaatgcttcaacacaagggttctatttata 11652671  T
Q  121 gaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||||||  |||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11652670 gaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11652580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 17683585 - 17683782
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa-ggttcataatgcttcagcacaagagttc 112  Q
    ||||| ||| ||||||||||||  | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||  |||||||||| |||||| ||||    
T  17683585 agagaacaatgtttagagagcggtgactagggtttcacaacttttgtgaattaagttaagcactcacaaaaaggttagtaatgcttcaacacaagggttc 17683684  T
Q  113 tatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  17683685 tatttatagaatcacttgtgtggtcagcaagacaacacttaaatacatcgtaccttacggtggactgcgtttctcta-ttttcgtaaattaaataataa 17683782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 25536292 - 25536490
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||    
T  25536292 agagaacaaggtttagagagcggcggcttgggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttct 25536391  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||| |||| |||||||||||||  ||||  ||||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  25536392 atttatagaatcacttgtgtgatcagaaagacaacacttaaatacactgtaccttacggtcgatcgcgtttctctattttttcgtaaattaaataataa 25536490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 16558717 - 16558797
Alignment:
Q  129 tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||||||||  || | |||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  16558717 tgtggtcagcaagacaacacttaaatataccgtatcttacggtggaccgcgtttctctatttttcataaattaaataataa 16558797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 28755534 - 28755579
Alignment:
Q  164 cttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||    
T  28755534 cttacggtaaaccacatttctctatttttcgtaaattaaataataa 28755579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 16393660 - 16393743
Alignment:
Q  92 aatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagacaa-cacttagctacatcgtaccttacggtg 172  Q
    |||| ||||||||||| ||||||||||||||| ||||||||  |||| |||| ||| ||||||  |||| ||||||||||||||    
T  16393660 aatgtttcagcacaagtgttctatttatagaaccacttgtgtcgtcatcaagtcaatcacttaaatacaccgtaccttacggtg 16393743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 18336592 - 18336553
Alignment:
Q  93 atgcttcagcacaagagttctatttatagaatcacttgtg 132  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  18336592 atgctttagcacaagagttctatttatagaaccacttgtg 18336553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 10337 - 10537
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| ||    
T  10337 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggt 10436  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10437 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 10536  T
Q  209 a 209  Q
    |    
T  10537 a 10537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 1444 - 1646
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| ||    
T  1444 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggt 1543  T
Q  111 tcta--tttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataa 206  Q
    ||||  ||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| ||||| ||    
T  1544 tctatttttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaa 1643  T
Q  207 taa 209  Q
    |||    
T  1644 taa 1646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 11535188 - 11535387
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagtt 111  Q
    ||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| |||    
T  11535188 agagagaacaaggtttagagagcggtggctagggtttcacaacttttgtgaattaggttaagcactaacaaaaagttagtaatgcttcaacacaagggtt 11535287  T
Q  112 ctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11535288 ctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11535387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 11542106 - 11542305
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagtt 111  Q
    ||||||| ||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||    
T  11542106 agagagaacaaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggtt 11542205  T
Q  112 ctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||  ||||| || ||||||||| ||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11542206 ctatttatagaatcacttgtgtggacaacaagacaacgcttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11542305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 29328870 - 29328666
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||    
T  29328870 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 29328771  T
Q  111 tcta----tttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaat 204  Q
    ||||    ||||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  29328770 tctatttttttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaat 29328671  T
Q  205 aataa 209  Q
    |||||    
T  29328670 aataa 29328666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 12739623 - 12739424
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagtt 111  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||| |||  ||||||| ||  ||||  |||    
T  12739623 agagagaacaaggtttagagagcggcggctacggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgctacaaaacaaaggtt 12739524  T
Q  112 ctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||  |||||||||||||||||||||||  ||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  12739523 ctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacattgtaccttacgatagaccgcgtttctctatttttcgtaaattaaataataa 12739424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 18562115 - 18561913
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||| |||  |||| ||||| |||||| ||    
T  18562115 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacaaaaagttagtaatacttcaacacaagggt 18562016  T
Q  111 tctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta--tttttcgtaaattaaataa 206  Q
    |||||||||||||| |||||||  |||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||  |||||||||||||||||||    
T  18562015 tctatttatagaattacttgtgtagtcagcaagacaacacttagatacaccgtactttacggtggaccgcgtttctctatttttttcgtaaattaaataa 18561916  T
Q  207 taa 209  Q
    |||    
T  18561915 taa 18561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 24850719 - 24850884
Alignment:
Q  46 tttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagac 143  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||| || ||| ||||||||||||||||||||||||  |||||||| ||    
T  24850719 tttcacaacttttgtgaattaggttaagcactcccaaaaagttcgtaatgcttcaacataagggttctatttatagaatcacttgtgtggtcagcaaaac 24850818  T
Q  144 aacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24850819 aacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 24850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 12751940 - 12751741
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagtt 111  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||||||| ||| ||||||| ||||||||||| |||  |||||||||| |||||  |||    
T  12751940 agagagaacaaggtttagagagcggcggctacggtttcacaacttttgtaaatgaggttaagcactcacaaaaagttagtaatgcttcaacacaatggtt 12751841  T
Q  112 ctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    | |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||  || |||||||||||||||||||||||||||||||||    
T  12751840 ccatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagactgcgtttctctatttttcgtaaattaaataataa 12751741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 11557198 - 11557392
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||       | ||||||| || ||| ||    
T  11557198 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaa------agtgcttcaacataagggt 11557291  T
Q  111 tctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||||||||||||||||  |||||||||||||||||||  |||| |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  11557292 tctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaacgtaccttacggtggactgcgtttctctatttttcgtaaattaaataata 11557391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 15153536 - 15153352
Alignment:
Q  24 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 123  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  15153536 gtttagagagcggcggctagg-tttcacaacttttgtgaatgaggtttagcactcacaaaaagtttgtaatgcttcaacacaagggttctatttatagaa 15153438  T
Q  124 tcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||  |||||||||||||||||||   ||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  15153437 tcacttgtgtggtcagcaagacaacacttaaacacaccgtaccttacggtggaccgcgtttctctatttttcataaattaaataat 15153352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 2653113 - 2653186
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa 84  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  2653113 cagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcataaaa 2653186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 9978910 - 9978834
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggt 87  Q
    ||||||||  ||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  9978910 cagagagaagaaggtttagagagcggcggctagggtttcacaacttttgcgaattaggttaagcactcacaaaaggt 9978834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 13393217 - 13393080
Alignment:
Q  38 ggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcact--tgtggtc 135  Q
    ||||||| ||||||||||||||| |||||||||||    ||||||||  |   ||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  13393217 ggctagggtttcacaacttttgtaaattaggttaagtgttcacaaaaactatgtaatgtttcagcacaagggttctatttatagaatcacttgtgtggtc 13393118  T
Q  136 agcaagacaa-cacttagctacatcgtaccttacggtg 172  Q
    |||||  ||| ||||||  |||||||||||||||||||    
T  13393117 agcaaaccaagcacttaagtacatcgtaccttacggtg 13393080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 13393060 - 13393006
Alignment:
Q  155 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  13393060 acattgtaccttacggtggaccgcatttctctatttttcgtaaattaaataataa 13393006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 9978832 - 9978782
Alignment:
Q  103 acaagagttctatttatagaatcact--tgtggtcagcaagacaacactta 151  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||||||    
T  9978832 acaagggttctatttatagaatcaatcgtgtggtcagcaagacaacactta 9978782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 207 - 4
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcac-----aaaaggttcataatgcttcagcaca 105  Q
    |||||||| ||||||||||| |||| |||||| | ||||||||||||||||||||||||||| |||||||     |||| ||||||||||||||| ||||    
T  207 cagagagaacaaggtttagatagcggcggctatggtttcacaacttttgtgaattaggttaagcactcacttttcaaaaagttcataatgcttcaacaca 108  T
Q  106 agagttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaa 203  Q
    || |||||||||||||||| |||||||  |||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  107 agggttctatttatagaataacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaa 8  T
Q  204 taat 207  Q
    ||||    
T  7 taat 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 19706298 - 19706497
Alignment:
Q  12 agagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagtt 111  Q
    |||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  | |||||||| || ||| |||    
T  19706298 agagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaacataagggtt 19706397  T
Q  112 ctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||  |||||||| ||||||||||||||  || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19706398 ctatttatagaatcacttgtgtggtcaacaagacaacacttaaatataccgtatcttacggtggaccgcgtttctctatttttcgtaaattaaataataa 19706497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 19713625 - 19713823
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    ||||||||  ||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| ||| |||  | |||||||| |||||| ||    
T  19713625 cagagagaaaaaggtttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaacacaagggt 19713724  T
Q  111 tctatttatagaatcacttgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||||||||||||||||||||    |||||||||||||||  || |  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19713725 tctatttatagaatcacttgtgtggtgcaagacaacacttaaatatactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 19713823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 24694585 - 24694783
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| | ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| || |||  |||  |||||||||| |||||| ||    
T  24694585 cagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcacccaaaaa--gttagtaatgcttcaacacaagggt 24694682  T
Q  111 tctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||| ||||||||||||  | || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24694683 tctatttatggaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 24694782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 24701349 - 24701547
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| | ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| || |||  |||  |||||||||| |||||| ||    
T  24701349 cagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcacccaaaaa--gttagtaatgcttcaacacaagggt 24701446  T
Q  111 tctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataata 208  Q
    ||||||||| ||||||||||||  | || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24701447 tctatttatggaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataata 24701546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18565594 - 18565791
Alignment:
Q  20 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag-gttcataatgcttcagcacaaga-----gttct 113  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||  |||  |||||||||| ||||| |     |||||    
T  18565594 caaggtttagagaccggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaagtttgtaatgcttcaacacaacacaagggttct 18565693  T
Q  114 atttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||||||  |||||||||||||||||||  |||| ||| |||||| ||| |||||||||||||| |||||||||||||||||||||    
T  18565694 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtgccttacagtggaccgcgtttctctaattttcgtaaattaaataataa 18565791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 21329380 - 21329569
Alignment:
Q  24 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttcta--tttatag 121  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||||||  |||||||    
T  21329380 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttttatag 21329479  T
Q  122 aatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21329480 aatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 21329569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 22790961 - 22791158
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttct 113  Q
    ||||| ||| || ||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||||| ||  ||||| |||||    
T  22790961 agagaacaaagtatagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgctacaaaacaagggttct 22791060  T
Q  114 atttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    |||||||||||||||  |||||||||||||||||||||||  |||| |||||||||| ||| || ||||||||||||||||||| |||||||||||||    
T  22791061 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacagtggactgcgtttctctatttttcgtgaattaaataataa 22791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 41664846 - 41664786
Alignment:
Q  13 gagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaa 73  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  41664846 gagagaacaaggtttagagaacgacggctagggtttcacaacttttgtgaattaggttaaa 41664786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 18620730 - 18620681
Alignment:
Q  159 cgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 209  Q
    ||||| |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  18620730 cgtacattacggtggaccacgtttctctattttt-gtaaattaaataataa 18620681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 8190 - 7989
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagt 110  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||    
T  8190 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggt 8091  T
Q  111 tctatttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataat 207  Q
    ||||||||||||||||||  ||||| || ||||||||||||||  |||| | |||||||||||| |||||||||||||| |||||||||| ||||| |||    
T  8090 tctatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctattttttcgtaagttaaacaat 7991  T
Q  208 aa 209  Q
    ||    
T  7990 aa 7989  T

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Target: scaffold0008 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 229515 - 229716
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag----gttcataatgcttcagcacaagag 109  Q
    ||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| | ||||     |||| | |||||||| || ||| |    
T  229515 agagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaaaagttcgtcatgcttcaacagaaggg 229614  T
Q  110 ttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||||||||||||||||  |||||||||| ||||||||  |||| |||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  229615 ttctatttatagaatcacttgtgtggtcagcaagaaaacacttaaatacaccgtaccttacggtggaccacatttctctatttttcgtaaattaaataat 229714  T
Q  208 aa 209  Q
    ||    
T  229715 aa 229716  T

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Target: scaffold0220 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 19395 - 19194
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacact-cacaaaaggttcataatgcttcagcacaagag 109  Q
    |||||||| | | |||||||||| | |||||||| ||||||||||||||||||||||||||| |||| ||||||| |||  ||||| |||| |||||| |    
T  19395 cagagagaactacgtttagagagtggcggctagggtttcacaacttttgtgaattaggttaagcacttcacaaaaagttagtaatgtttcaacacaaggg 19296  T
Q  110 ttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 207  Q
    |||||||||||||||||||||||  | || ||||||||||||||  |||| |||||||| | ||| ||||||||||| ||| ||||||||||||||||||    
T  19295 ttctatttatagaatcacttgtgtgggcaacaagacaacacttaaatacaccgtaccttccagtggaccgcgtttctttatatttcgtaaattaaataat 19196  T
Q  208 aa 209  Q
    ||    
T  19195 aa 19194  T

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Target: scaffold0063 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 6607 - 6404
Alignment:
Q  14 agagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag------gttcataatgcttcagcacaag 107  Q
    ||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| | ||||       |||| | |||||||| ||||||    
T  6607 agagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaaaaaagttcgtcatgcttcaacacaag 6508  T
Q  108 agttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaata 205  Q
     ||||||||||||||||||||||||  |||||||||||||||||||  |||| | ||| |||||||| |||| ||||||| |||||||||||||||||||    
T  6507 ggttctatttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccatactttacggtggaccgagtttctccatttttcgtaaattaaata 6408  T
Q  206 ataa 209  Q
    ||||    
T  6407 ataa 6404  T

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Target: scaffold0032 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 107372 - 107494
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactc-acaaaaggttcataatgcttcagcacaagag 109  Q
    |||||||| |||| |||| |||| | |||||||| |||||||||||||||||||||  ||||    || ||||||  ||  ||||||||||||||||| |    
T  107372 cagagagaacaagatttaaagagtggcggctagggtttcacaacttttgtgaattatcttaagtgttcaacaaaaacttagtaatgcttcagcacaaggg 107471  T
Q  110 ttctatttatagaatcacttgtg 132  Q
    ||||||||| |||| ||||||||    
T  107472 ttctatttacagaaccacttgtg 107494  T

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Target: scaffold0502 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 128 - 10
Alignment:
Q  11 cagagagaccaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcata-atgcttcagcacaagag 109  Q
    |||||||| |||||||||||||||| ||| ||   |||||| |||||| |||||||||| || ||||  |||||   ||  | |||||| ||||||||||    
T  128 cagagagaacaaggtttagagagcggcggatactgtttcaccacttttatgaattaggtaaagcactt-caaaa---tcggacatgctttagcacaagag 33  T
Q  110 ttctatttatagaatcacttgtg 132  Q
    |||||||||||||| ||||||||    
T  32 ttctatttatagaaccacttgtg 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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