View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_16 (Length: 413)
Name: NF19301_high_16
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 55172401 - 55172017
Alignment:
| Q |
11 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattaa |
110 |
Q |
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| T |
55172401 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattat |
55172302 |
T |
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| Q |
111 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
210 |
Q |
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| T |
55172301 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
55172202 |
T |
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| Q |
211 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacggcaatggtgagtgagaggagaggaaatggcaagagttttatatgattctaac |
310 |
Q |
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| T |
55172201 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacgacaatggtgagtgataggagaggaaatggcaagagttttatatgattctaac |
55172102 |
T |
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| Q |
311 |
tttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaac |
395 |
Q |
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| T |
55172101 |
tttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaac |
55172017 |
T |
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