View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_high_28 (Length: 327)
Name: NF19301_high_28
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_28 |
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| [»] scaffold0150 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 9264 - 8956
Alignment:
| Q |
19 |
ccagtttctatatattccatctacgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9264 |
ccagtttctatatattccatctacgttattcccatgaatcggcctatataattcaataatacagcttcttggtttgttatcattccaatatggcttcttc |
9165 |
T |
|
| Q |
119 |
tacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9164 |
tacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttctt |
9065 |
T |
|
| Q |
219 |
ttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctatagcagtgttgaaactt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9064 |
ttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactt |
8965 |
T |
|
| Q |
319 |
tgtccgata |
327 |
Q |
| |
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||||||||| |
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| T |
8964 |
tgtccgata |
8956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 17956 - 18058
Alignment:
| Q |
121 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
220 |
Q |
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|||||||||||| |||| |||||||||||||||| |||||||| | |||||| | |||||| |||||||||||||| ||| | || ||||| |||||||| |
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| T |
17956 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttctttt |
18055 |
T |
|
| Q |
221 |
caa |
223 |
Q |
| |
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||| |
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| T |
18056 |
caa |
18058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 41 - 326
Target Start/End: Original strand, 17020028 - 17020313
Alignment:
| Q |
41 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17020028 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttgatttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
17020127 |
T |
|
| Q |
141 |
accctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccag |
240 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17020128 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17020227 |
T |
|
| Q |
241 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctatagcagtgttgaaactttgtccgat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17020228 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgat |
17020313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 41 - 326
Target Start/End: Original strand, 17550465 - 17550750
Alignment:
| Q |
41 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
140 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17550465 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttgttttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
17550564 |
T |
|
| Q |
141 |
accctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccag |
240 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17550565 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17550664 |
T |
|
| Q |
241 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctatagcagtgttgaaactttgtccgat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17550665 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgat |
17550750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 17017117 - 17017015
Alignment:
| Q |
121 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
220 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | || |||| |||||||| |
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| T |
17017117 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt |
17017018 |
T |
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| Q |
221 |
caa |
223 |
Q |
| |
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||| |
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| T |
17017017 |
caa |
17017015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 17547554 - 17547452
Alignment:
| Q |
121 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
220 |
Q |
| |
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|||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | || |||| |||||||| |
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| T |
17547554 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt |
17547455 |
T |
|
| Q |
221 |
caa |
223 |
Q |
| |
|
||| |
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|
| T |
17547454 |
caa |
17547452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 17522266 - 17522368
Alignment:
| Q |
121 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
220 |
Q |
| |
|
||||||| ||| ||||||| || | || ||||| || ||||| | |||| |||||||||| ||||||||||| |||||| ||||| | || |||||||| |
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| T |
17522266 |
cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt |
17522365 |
T |
|
| Q |
221 |
caa |
223 |
Q |
| |
|
||| |
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| T |
17522366 |
caa |
17522368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 52134022 - 52133746
Alignment:
| Q |
54 |
gaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccac---caacaaagtgaccctcaaac |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||| || ||| ||||||||||| |||||||| | |||||||||||||||||||| |
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|
| T |
52134022 |
gaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtgaccctcaaac |
52133923 |
T |
|
| Q |
151 |
ttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactgt |
250 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||| |||||||| || ||| |||||||||||||||| || || ||||||| ||||| || ||||| || |
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|
| T |
52133922 |
ttctcattgacactaaaaatgacaaagttctgttcgctgaagcttccaaagctgtgatagattttctctttaacttgcttcgcttgcctgtcggtacagt |
52133823 |
T |
|
| Q |
251 |
tgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctatagcagtgttgaaactttgtccgata |
327 |
Q |
| |
|
|||||||| | | ||| |||||||||||||||||||| ||||| |||||| |||||||||||| |||| |||| |
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|
| T |
52133822 |
agttaaactactgaccaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgata |
52133746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 286
Target Start/End: Complemental strand, 52145854 - 52145674
Alignment:
| Q |
103 |
ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaac |
202 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | | || ||||| || || || | ||||||||||||||| ||||||||||| |||||| | |
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| T |
52145854 |
ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatc |
52145758 |
T |
|
| Q |
203 |
tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtag |
286 |
Q |
| |
|
||| ||||| ||||| |||||| |||| | |||||| |||| || || ||||| || ||| || ||||||||| ||||||| |
|
|
| T |
52145757 |
tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtag |
52145674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 52142292 - 52142155
Alignment:
| Q |
150 |
cttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactg |
249 |
Q |
| |
|
||||| || ||||| | |||| |||||||||| ||||||||||| |||||| |||| |||| ||||||||||| |||| |||||||| | || |||| |
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|
| T |
52142292 |
cttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtcgtagactttcttttcaacttgctatgtttgccaatcggcactg |
52142193 |
T |
|
| Q |
250 |
ttgttaaacttttaaacaagaatggcatggttggtagc |
287 |
Q |
| |
|
|||| || || ||| | |||||||||||||||||| |
|
|
| T |
52142192 |
ttgtgaagctgctaagcgctaatggcatggttggtagc |
52142155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 52150285 - 52150221
Alignment:
| Q |
154 |
tcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctt |
218 |
Q |
| |
|
|||||||||| | ||| ||||||||||| ||||||||| |||||||| |||| ||||| ||||| |
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|
| T |
52150285 |
tcattgacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtagatattctt |
52150221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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