View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19301_high_31 (Length: 319)

Name: NF19301_high_31
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19301_high_31
NF19301_high_31
[»] chr7 (1 HSPs)
chr7 (118-319)||(35451150-35451350)
[»] chr5 (5 HSPs)
chr5 (248-317)||(9860748-9860817)
chr5 (252-318)||(7367609-7367675)
chr5 (289-319)||(15024800-15024830)
chr5 (262-319)||(16609665-16609722)
chr5 (267-319)||(528838-528890)
[»] chr3 (1 HSPs)
chr3 (266-319)||(42529470-42529523)
[»] chr8 (2 HSPs)
chr8 (266-318)||(12020094-12020146)
chr8 (263-319)||(20472419-20472475)
[»] chr2 (3 HSPs)
chr2 (263-317)||(31827312-31827366)
chr2 (266-319)||(25726957-25727010)
chr2 (282-319)||(10156316-10156355)
[»] chr1 (3 HSPs)
chr1 (266-304)||(11391344-11391382)
chr1 (267-317)||(29561257-29561307)
chr1 (263-319)||(15275969-15276025)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 118 - 319
Target Start/End: Complemental strand, 35451350 - 35451150
Alignment:
Q  118 tgttaggcttaagtttgttggggctttcttatacactgtactatatacaacgaccacaacaaaacggtatcagccgtagtgccgttaccattttaaagga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35451350 tgttaggcttaagtttgttggggctttcttatacactgtactatatacaacgaccacaacaaaacggtatcagccgtagtgccgttaccgttttaaagga 35451251  T
Q  218 attaatgnnnnnnnntaatcacaaactcaattgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 317  Q
    |||||||         ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35451250 attaatgaaaaaaaa-aatcacaaactcaattgatttatgggttaaaagagttggaggttttgggttcaaactcaaacgaatgagtaaatattaatctaa 35451152  T
Q  318 ca 319  Q
    ||    
T  35451151 ca 35451150  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 9860817 - 9860748
Alignment:
Q  248 ttgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 317  Q
    |||||||| |||||||| |||||||||||  |||||||||||||| || || ||||||||| ||||||||    
T  9860817 ttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggagtaaatactaatctaa 9860748  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 7367609 - 7367675
Alignment:
Q  252 gctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 318  Q
    |||| |||||||| ||||||||||| ||| |||||||| |  ||||| |||||||||||||||||||    
T  7367609 gctaagggttaaaggagttggaggtcttgggttcaaacaccgacgaaggagtaaatattaatctaac 7367675  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 15024830 - 15024800
Alignment:
Q  289 ctcaaacgaatgagtaaatattaatctaaca 319  Q
    |||||||||||||||||||||||||||||||    
T  15024830 ctcaaacgaatgagtaaatattaatctaaca 15024800  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 16609722 - 16609665
Alignment:
Q  262 aaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    |||| |||| ||||||||| ||||||||||| | ||| || |||||||||||||||||    
T  16609722 aaaaaagtttgaggttttgggttcaaactcagatgaaggaataaatattaatctaaca 16609665  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 528890 - 528838
Alignment:
Q  267 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    ||||||||||| || ||| |||| |||||||| || |||||||||||||||||    
T  528890 agttggaggttatgggttaaaacccaaacgaaagaataaatattaatctaaca 528838  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 42529470 - 42529523
Alignment:
Q  266 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    |||||||||||  |||||||||||| ||||||| ||||||||||||||||||||    
T  42529470 gagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaaca 42529523  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 12020094 - 12020146
Alignment:
Q  266 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 318  Q
    |||||||||||  || |||||||| |||| |||||||||||||||||||||||    
T  12020094 gagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaac 12020146  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 20472419 - 20472475
Alignment:
Q  263 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    ||||||||||||  | || ||||||||||| ||| | ||||||||||||||||||||    
T  20472419 aaagagttggagactctgggttcaaactcagacggaagagtaaatattaatctaaca 20472475  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 31827366 - 31827312
Alignment:
Q  263 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 317  Q
    ||||||||||||||  || |||||||| | ||| |||||||||||||||||||||    
T  31827366 aaagagttggaggtcatgtgttcaaacacgaacaaatgagtaaatattaatctaa 31827312  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 25727010 - 25726957
Alignment:
Q  266 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    |||| ||||||| ||  |||||||| |||| |||||||||||||||||||||||    
T  25727010 gagtcggaggttatggattcaaactaaaacaaatgagtaaatattaatctaaca 25726957  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 10156316 - 10156355
Alignment:
Q  282 gttcaaactcaaacgaatgagt--aaatattaatctaaca 319  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  10156316 gttcaaactcaaacgaatgagtaaaaatattaatctaaca 10156355  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 11391382 - 11391344
Alignment:
Q  266 gagttggaggttttgagttcaaactcaaacgaatgagta 304  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  11391382 gagttggaagttctgagttcaaactcaaacgaatgagta 11391344  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 29561257 - 29561307
Alignment:
Q  267 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 317  Q
    ||||| || |||||||||||||| || || |||||||||||||||||||||    
T  29561257 agttgaagattttgagttcaaacccatacaaatgagtaaatattaatctaa 29561307  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 15276025 - 15275969
Alignment:
Q  263 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaaca 319  Q
    |||||||| |||||| ||||||||||  ||||| || ||||||||||||||| ||||    
T  15276025 aaagagtttgaggttatgagttcaaatccaaacaaaagagtaaatattaatcaaaca 15275969  T

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