View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_high_34 (Length: 301)
Name: NF19301_high_34
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 54867852 - 54868109
Alignment:
| Q |
10 |
atgatgtaacaactccaccagcaccacctgttgttgttgctcctgtgccatctgctgagacaacaacta---gtcatgatcaaggaga---gaagaaagg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
54867852 |
atgatgtaacaactccaccagcaccacctgttgttgttgctcctg---------ctgagacaacaactactagtcatgatcaaggagatcagaagaaagg |
54867942 |
T |
|
| Q |
104 |
tatattggaaaagatcaaagagaagattcctggttatcaccctaagactgctactgatcatgatcatgatcatgatcacaaggatcagactacttctcat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54867943 |
tatattggaaaagatcaaagagaagattcctggttatcaccctaagactgctactgatcatgatcatgatcatgatcacaaggatgagactacttctcat |
54868042 |
T |
|
| Q |
204 |
tgattatcatcgatccatatattgttctgttttgtggcttaatttgggggtgctttgtttaattcattttgattt |
278 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
54868043 |
tgattatcatcgatcc----attcttctgttttgtggc----tttgggggtgctttgtttaattcattttcattt |
54868109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University