View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_41 (Length: 250)
Name: NF19301_high_41
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_41 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8996 - 8800
Alignment:
| Q |
1 |
cattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctat |
100 |
Q |
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| T |
8996 |
cattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctat |
8897 |
T |
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| Q |
101 |
tcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgaggaaatttattctatagatgcggaggctgctgta |
197 |
Q |
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| T |
8896 |
tcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgaggaaatttattctatagatgcagaggcggctgta |
8800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 8469 - 8422
Alignment:
| Q |
194 |
tgtatttttaagttttaacattttgttttattcacacattggcctttg |
241 |
Q |
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| T |
8469 |
tgtatttttaagttttaacattttgttttattcacacattggcctttg |
8422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 17020274 - 17020459
Alignment:
| Q |
1 |
cattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctat |
100 |
Q |
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| T |
17020274 |
cattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaagaggttta-ctgaaccccaaagctcctatctct |
17020372 |
T |
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| Q |
101 |
tcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgaggaaatttattctatagatgcgga |
187 |
Q |
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| T |
17020373 |
tcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttgggaggttgaggaaatttgttctatagatgcgga |
17020459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 17550711 - 17550896
Alignment:
| Q |
1 |
cattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctat |
100 |
Q |
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| T |
17550711 |
cattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaagaggttta-ctgaaccccaaagctcctatctct |
17550809 |
T |
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| Q |
101 |
tcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgaggaaatttattctatagatgcgga |
187 |
Q |
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| T |
17550810 |
tcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttgggaggttgaggaaatttgttctatagatgcgga |
17550896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 52133782 - 52133655
Alignment:
| Q |
5 |
ggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctattcaa |
104 |
Q |
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| T |
52133782 |
ggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgtctcttctg |
52133683 |
T |
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| Q |
105 |
ctgaaattgcaggccttcttcccgcaaa |
132 |
Q |
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| T |
52133682 |
ctggaattgctggctttcttcccgcaaa |
52133655 |
T |
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