View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_high_46 (Length: 244)
Name: NF19301_high_46
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_46 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 55172611 - 55172378
Alignment:
| Q |
11 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172611 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
55172512 |
T |
|
| Q |
111 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacaatgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55172511 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacattgc |
55172412 |
T |
|
| Q |
211 |
ttaaagacaccacagattatggatggtacaccac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
55172411 |
ttaaagacaccacagattatggatggtacaccac |
55172378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University