View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_48 (Length: 237)
Name: NF19301_high_48
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 39346251 - 39346487
Alignment:
| Q |
1 |
caaaatgcttgaactattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgtttaggtatacatgaatgctctacgtatattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
39346251 |
caaaatgcttgaactattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgttgagggatacatgaatgctctacgtatattc |
39346350 |
T |
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| Q |
101 |
aatgacatgataggccttgttctctaaaacttctcttctatataactctattaggagatatttcatacagacttgtataaagaaatggtaatttgatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39346351 |
aatgacatgataggccttgttctctaaaacttcttttctatataactctattaggagatatttcatacagacttgtataaagaaatgataatttgatgat |
39346450 |
T |
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| Q |
201 |
tcaagtctcactagttttttattttgtagttttcttc |
237 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
39346451 |
tcaagtctcactagttttagattttgtagttttcttc |
39346487 |
T |
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