View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_5 (Length: 491)
Name: NF19301_high_5
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 68 - 472
Target Start/End: Original strand, 9973141 - 9973545
Alignment:
| Q |
68 |
tcaaaaccaatgtaatgattaattaccaatgtaattaaactgaagtactccctccaaccctgattttatttaaatattttgaattcttgcaggccaacca |
167 |
Q |
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| T |
9973141 |
tcaaaaccaatgtattgattaattaccaatgtaattaaactgaagtactccctccgaccctgattttatttaaatattttgaaatcttgcaggccaacca |
9973240 |
T |
|
| Q |
168 |
gtggtgaagttgcaaccgacttagaagaagggtctggctagatttagagaaatattctgcagtcacagttttttgttggctgtgtatgattacaagacat |
267 |
Q |
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| T |
9973241 |
gtggtgaagttgcaaccgacttggaagaagggtctggctagatttagagaaatattctgcagtcacagttttttgttggctgtgtatgattacaagacat |
9973340 |
T |
|
| Q |
268 |
tttattgtatgtatacacaggagtagtttgcagaagttttgttttcttcttaaatttgtcattatagtctttcattaagtttgtagaaatatggttcaga |
367 |
Q |
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| T |
9973341 |
tttattgtatgtatacacaggagtagtttgcagaagttttgttttcttcttaaatttgtcattatagtctttcattaagtttgtagaaatatggttcaga |
9973440 |
T |
|
| Q |
368 |
aaactcaaaatgtttggatgagatggtctaaatatttttgagcttagctagtggtttctgttcaaatccaattcttgtgaatgcaacaatgtccaactct |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9973441 |
aaactcaaaatgtttggatgagatggtctaaatatttttgagcttagctagtggtttctgttcaaatccaattcttgtgaatgcaacaatgtccaactct |
9973540 |
T |
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| Q |
468 |
agggg |
472 |
Q |
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| T |
9973541 |
agggg |
9973545 |
T |
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