View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_6 (Length: 452)
Name: NF19301_high_6
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 321
Target Start/End: Original strand, 2322015 - 2322287
Alignment:
| Q |
44 |
agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtcttaa |
143 |
Q |
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| T |
2322015 |
agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtcttaa |
2322114 |
T |
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| Q |
144 |
attatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataaca |
243 |
Q |
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| T |
2322115 |
attatagggttgtaacttgtaattttgagtgtgctgaagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataaca |
2322214 |
T |
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| Q |
244 |
aaatccacagttttagagctagtttaatttgtcaacctgagttaatcatcataaattactgtatcctaaatacaccta |
321 |
Q |
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| T |
2322215 |
agatccacagttttagagctag-----tttgtcaacctgagttaatcatcatcaattactgtatcctaaatactccta |
2322287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 2294657 - 2294793
Alignment:
| Q |
105 |
tatagattatgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatg |
204 |
Q |
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| T |
2294657 |
tatagattatgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatg |
2294756 |
T |
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| Q |
205 |
gccagaatgaaatggtacttcatgattttcttaataa |
241 |
Q |
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| T |
2294757 |
gccaaagtgaaatggtgcttcatgattttcttaataa |
2294793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 2322420 - 2322492
Alignment:
| Q |
320 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacgaggttaatatctctcttttat |
392 |
Q |
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| T |
2322420 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacaaggttaatatctctcttttat |
2322492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2321908 - 2321972
Alignment:
| Q |
1 |
gtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa |
65 |
Q |
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| T |
2321908 |
gtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa |
2321972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 2304461 - 2304534
Alignment:
| Q |
180 |
aagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataacaaaatccacag |
253 |
Q |
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| T |
2304461 |
aagtgatgcatagaatagagttatggccaaagtgaaatggtgcttcatgattttcttaataacaagatccacag |
2304534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 2331566 - 2331656
Alignment:
| Q |
47 |
aatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtc |
139 |
Q |
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| T |
2331566 |
aatgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtggtc |
2331656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 2332248 - 2332315
Alignment:
| Q |
130 |
atctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagt |
200 |
Q |
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| T |
2332248 |
atctgtggtcttaatttc-agggttgtaatttgtaattttga--gtgcagaaatgatgcaaagaatagagt |
2332315 |
T |
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