View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_high_60 (Length: 201)
Name: NF19301_high_60
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 47299479 - 47299308
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47299479 |
aacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatacaattaa |
47299380 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtct |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299379 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtct |
47299308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 47292872 - 47292713
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
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| T |
47292872 |
aacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccatcttgaatacaaacaaattttttcgccaaataccattaa |
47292773 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagc |
171 |
Q |
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|||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
47292772 |
ggaagaagatactgcttctctagttcatcgatctttcttctttagagcttctgacatagc |
47292713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 47267376 - 47267520
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
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| T |
47267376 |
aacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtcaaatacaatcaa |
47267475 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttag |
156 |
Q |
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|||| ||||||| | | ||||| |||||||||||||||||||| |
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| T |
47267476 |
ggaagaagataccacaaccctagttcatcaatctttcttctttag |
47267520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 47242465 - 47242609
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cat |
108 |
Q |
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|
||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||| |
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| T |
47242465 |
aacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacat |
47242564 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctt |
153 |
Q |
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|| ||| |||||||| || |||||||||||||||||||||| |
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| T |
47242565 |
caaagaagaagatactactatcgtagtccatcaatctttcttctt |
47242609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 47256593 - 47256737
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cat |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||| |||||||| ||| |||||||||| ||| |
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| T |
47256593 |
aacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccatcgtgaatatgaacaaatacttccgccaaatacgtacat |
47256692 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctt |
153 |
Q |
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|||||| |||||||| || | |||||||||||||||||||||| |
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| T |
47256693 |
caaggaagaagatactactattgtagtccatcaatctttcttctt |
47256737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 47283362 - 47283484
Alignment:
| Q |
36 |
taatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttct---ct |
132 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||||| |||||||| ||| || |||||| || |||||| ||||| ||||| || | |
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| T |
47283362 |
taatggctagagaccctccacgcattacttgcaaccatcgtgaatatgaacaaatacttacgtcaaatatcaacaaggaagaagatgctgctactaccat |
47283461 |
T |
|
| Q |
133 |
agtccatcaatctttcttcttta |
155 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47283462 |
agtccatcaatctttcttcttta |
47283484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 47278769 - 47278891
Alignment:
| Q |
36 |
taatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaaga---tactgcttctct |
132 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| |||||| || |||||| |||| | ||||| | | |
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| T |
47278769 |
taatggcaagagaccctccacgtgttacttgcaaccatcatgaatacgaacaaatactttcgtcaaatatcaacaaggaagaagatgttgctgctaccat |
47278868 |
T |
|
| Q |
133 |
agtccatcaatctttcttcttta |
155 |
Q |
| |
|
||||||||| ||||||||||||| |
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| T |
47278869 |
agtccatcactctttcttcttta |
47278891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 32731136 - 32731280
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cat |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| ||| |
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| T |
32731136 |
aacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacat |
32731235 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctt |
153 |
Q |
| |
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|| ||| |||||||| || |||||||||||||||||||||| |
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| T |
32731236 |
caaagaagaagatactactatcgtagtccatcaatctttcttctt |
32731280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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