View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_high_9 (Length: 446)
Name: NF19301_high_9
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_high_9 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 51359955 - 51360384
Alignment:
| Q |
18 |
acttatgagtctctatttcatacaactcttcagaattatcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattac-a |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51359955 |
acttatgagtctctatttcatacaactcttcagaattatcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattacta |
51360054 |
T |
|
| Q |
117 |
aaagaattagttaacacataattatttggagaaaatgaagaaaagggtacctgtaaaatactcaacaatggactctcccccggaattcgtttacgataga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51360055 |
aaagaattagttaacacataattatttggagaaaatgaagaaaagggtacctgtaaaatactcaacaatggactctccccaggaattcgtttacgataga |
51360154 |
T |
|
| Q |
217 |
atctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactac |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51360155 |
atctctttccagcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactac |
51360254 |
T |
|
| Q |
317 |
aaaagtgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51360255 |
aaaagtgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaat |
51360354 |
T |
|
| Q |
417 |
tgatctgctcctagagcaggaacacaacct |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51360355 |
tgatctgctcctagagcaggaacacaacct |
51360384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 166 - 335
Target Start/End: Original strand, 51350750 - 51350919
Alignment:
| Q |
166 |
cctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagag |
265 |
Q |
| |
|
|||||||||||| ||||||||||||| | || ||| | | ||| ||||||||||||||| | |||||||||||| ||||||| | || | || |||| |
|
|
| T |
51350750 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
51350849 |
T |
|
| Q |
266 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
335 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || ||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
51350850 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
51350919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 51350938 - 51351011
Alignment:
| Q |
369 |
aagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacaca |
442 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
51350938 |
aagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacaca |
51351011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 51350503 - 51350558
Alignment:
| Q |
64 |
tttcacactccaattcttaactgtgacaaccaacacctgcaagaataattacaaaa |
119 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
51350503 |
tttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaattacaaaa |
51350558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University