View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_1 (Length: 738)
Name: NF19301_low_1
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 349 - 728
Target Start/End: Original strand, 182869 - 183248
Alignment:
| Q |
349 |
gattaaataggagtatttttgtaacagtaataaacaggatctcatgtgaaaggtatataatggaccatcatttaattgattttatagccaatcagttcat |
448 |
Q |
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| T |
182869 |
gattaaataggagtatttttgtaacagtaataaacaggatctcatgtgaaagttatataatgggccattatttaattgattttatagccaatcagttcat |
182968 |
T |
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| Q |
449 |
ataaaagtatgcaatcctaacaaactatctatttgattaatgagtgaagatacaatttaattcagtctctaacaataaataaaacacaaattaatctatg |
548 |
Q |
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| T |
182969 |
ataaaagtatgcaatcctaacaaactatctatttgattaatgagtgaagatacaatttaattcagtctctaacaataaataaaacacaaattaatctatg |
183068 |
T |
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| Q |
549 |
acattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggatttatgttttgtcaagtagtacttaattctctaagaaaa |
648 |
Q |
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| T |
183069 |
acattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggatttatgttttgtcaagtagtacttaattctctaagaaaa |
183168 |
T |
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| Q |
649 |
ttatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacacttattctctcattgatgatg |
728 |
Q |
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| T |
183169 |
ttatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacacttattctctcattgatgatg |
183248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 182535 - 182807
Alignment:
| Q |
19 |
attgagagtacatttgttcaagagttgaagaaagtgagtttcgtggcagctccaatggtagctgtaactgtttcacaatatcttcttcaagtggtttctc |
118 |
Q |
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| T |
182535 |
attgagagtacatttgttcaagagttgaagaaagtgagtttcgttgcagctccaatggtagctgtaactgtttcacaatatcttcttcaagtggtttctc |
182634 |
T |
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| Q |
119 |
ttatgatggttggacatcttggtatacttgtttcattctctggtgtttccattgccatgtcttttgctgaagttactggctttagtgtccttgtatgttc |
218 |
Q |
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| T |
182635 |
ttatgatggttggacatcttggtatacttgtttcattctctggtgtttccattgccatgtcttttgctgaagttactggctttagtgtccttgtatgttc |
182734 |
T |
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| Q |
219 |
ttcttaactctttctttccttttcttggattcaactatc----aatacaactagtatatatgcatctctaagc |
287 |
Q |
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| T |
182735 |
ttcttaactctttctttccttttcttggattcaactatcaatgaatacaactagtatatatgcatctctaagc |
182807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 15962650 - 15962607
Alignment:
| Q |
564 |
ggataaattagtccataaatcattgtattatagagactaatttg |
607 |
Q |
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| T |
15962650 |
ggataaattagtccttaactcattgtattagagagactaatttg |
15962607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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