View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_12 (Length: 430)
Name: NF19301_low_12
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 40466621 - 40467006
Alignment:
| Q |
19 |
gtgacacccaatagatagccctttaattttattttccaagtcaattgaatgtgtcacttcaacttgtgtaagttcatgcatgtttgaattcatgatgact |
118 |
Q |
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| T |
40466621 |
gtgacacccaatagatagccctttaattttaatttc-aagtcaattgaatgtgtcacttcaacttgtgtaagttcatgcatgtttgaattcacgatgatt |
40466719 |
T |
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| Q |
119 |
ataataaaatcacggcgtaccactttaattttttcacaaactacactttaaaacttcatagaatctaaatgtgggtgattagtgaaatgaatgtcgtgag |
218 |
Q |
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| T |
40466720 |
ataataaaatcacggtgtaccattctaattttttcaaaaactacactttaaaacttcatagaatttaaatgtgggtgattagtgaaatgaatgtcgtgag |
40466819 |
T |
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| Q |
219 |
cgtttattaaaagatatacaagaaaagtgatctatatgctcaatatttttaggttttaatgaagatgtaattgtttgctctttagatagttaatcttcaa |
318 |
Q |
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| T |
40466820 |
tatttattaaaagatatacaagaaaagtgatttatatgctcaatatttttaggttttaatgaagatatgattgtttgctctttcgatagttaatcttcaa |
40466919 |
T |
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| Q |
319 |
catgtgtaagttaaacacaagaaatcaaccgtgttgaagttcaagtgtgagttgctagtgagatatcaactagatgaaagatatata |
405 |
Q |
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| T |
40466920 |
catgtgtaagttaaacacaagaaatcaaccgtgttgaagttcaagtgtgagttgctagtgagatatcaactagatgaaagatatata |
40467006 |
T |
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