View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19301_low_15 (Length: 419)

Name: NF19301_low_15
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19301_low_15
NF19301_low_15
[»] chr6 (3 HSPs)
chr6 (118-414)||(16872052-16872346)
chr6 (23-89)||(353104-353170)
chr6 (35-87)||(14802893-14802945)
[»] chr4 (3 HSPs)
chr4 (174-311)||(36286373-36286510)
chr4 (32-89)||(54572967-54573024)
chr4 (183-241)||(40823616-40823674)
[»] chr1 (3 HSPs)
chr1 (19-89)||(47833903-47833973)
chr1 (25-88)||(26310395-26310456)
chr1 (26-87)||(25588796-25588857)
[»] chr5 (1 HSPs)
chr5 (19-89)||(33827591-33827661)
[»] chr3 (5 HSPs)
chr3 (19-89)||(53837499-53837569)
chr3 (20-88)||(53833902-53833970)
chr3 (24-87)||(24734262-24734325)
chr3 (197-242)||(1091486-1091531)
chr3 (27-87)||(7909524-7909582)
[»] chr2 (2 HSPs)
chr2 (28-92)||(36338902-36338965)
chr2 (20-87)||(44686131-44686198)
[»] chr7 (6 HSPs)
chr7 (189-242)||(19939357-19939410)
chr7 (189-242)||(19970496-19970549)
chr7 (173-241)||(20231783-20231851)
chr7 (182-241)||(20243855-20243914)
chr7 (183-238)||(20005149-20005204)
chr7 (182-241)||(20264242-20264301)
[»] chr8 (1 HSPs)
chr8 (20-85)||(15051610-15051673)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 118 - 414
Target Start/End: Original strand, 16872052 - 16872346
Alignment:
Q  118 aaataataataaaacaaggagctatgatgaggggcttacaaatcctataattaatgtcaaaaatacttgtgtttcttcttccactaacaatctctagtag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16872052 aaataataataaaacaaggagctatgatgaggggcttacaaatcctataattaatgtcaaaaatacttgt--ttcttcttccactaacaatctctagtag 16872149  T
Q  218 taatactccaaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaat 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872150 taatactccgaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaat 16872249  T
Q  318 gagctcttcgtatattttacaatctttttggtgaaagagaaaggtgtgtatactttctatgttccaacaattcttgtcatatatccttcatctcact 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16872250 gagctcttcgtatattttacaatctttttggtgaaagagaaaggtgtgtatactttctatgttccaacaattcttgtcatatatccttcatttcact 16872346  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 353104 - 353170
Alignment:
Q  23 cggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttac 89  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  353104 cggggtggcgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttac 353170  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 14802893 - 14802945
Alignment:
Q  35 atactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttt 87  Q
    |||||||||| ||||| | || ||||| ||||||| |||||||||||||||||    
T  14802893 atactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagttt 14802945  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 36286510 - 36286373
Alignment:
Q  174 tcaaaaatacttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatcatatagctaagaaacaatttcttgcattgcgt 273  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| || |||  ||||||||| ||||||||||||    
T  36286510 tcaaaaagacttgtgtttcttctaccaaaaacaatctctagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 36286411  T
Q  274 attcgggagatatgcagtgactacatttaaagctcaaa 311  Q
    |||| ||||||||| || |||| ||||||||| |||||    
T  36286410 attctggagatatgtagcgactgcatttaaaggtcaaa 36286373  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 54572967 - 54573024
Alignment:
Q  32 gaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttac 89  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  54572967 gaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttac 54573024  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 40823616 - 40823674
Alignment:
Q  183 cttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 241  Q
    |||| ||||||||| ||||||| |||||||||||  || || |||||||||||||||||    
T  40823616 cttgagtttcttctcccactaataatctctagtatcaaaacaccaaagctaaagacatc 40823674  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 47833903 - 47833973
Alignment:
Q  19 catccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttac 89  Q
    |||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||    
T  47833903 catccggggtggcgaaatactcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagtttac 47833973  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 26310456 - 26310395
Alignment:
Q  25 gggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttta 88  Q
    ||||||| ||||||||||||||| || || |||  || ||||||||||||||||||||||||||    
T  26310456 gggtggcaaaatactcttaagcctagtgcatcg--caagcctcagtcaataatcgataagttta 26310395  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 25588796 - 25588857
Alignment:
Q  26 ggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttt 87  Q
    |||||||||||||||||||||  ||  ||  |||||| ||| ||||||||||||||||||||    
T  25588796 ggtggcgaaatactcttaagcaaagtactatgtgcacaccttagtcaataatcgataagttt 25588857  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 33827591 - 33827661
Alignment:
Q  19 catccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttac 89  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||    
T  33827591 catccggggtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttac 33827661  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 53837569 - 53837499
Alignment:
Q  19 catccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttac 89  Q
    |||||| ||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  53837569 catccgaggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttac 53837499  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 53833970 - 53833902
Alignment:
Q  20 atccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttta 88  Q
    ||||||| |||| |||||||||| ||||||| ||||| |||||||||||  ||||||||||||||||||    
T  53833970 atccgggatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagttta 53833902  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 24734325 - 24734262
Alignment:
Q  24 ggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttt 87  Q
    ||||||||||| ||||||||||  | | ||||||||||| |||||||||||||| |||||||||    
T  24734325 ggggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttt 24734262  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 1091531 - 1091486
Alignment:
Q  197 tccactaacaatctctagtagtaatactccaaagctaaagacatca 242  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||||||    
T  1091531 tccacttacaatctctagtaataatacaccaaagctaaatacatca 1091486  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 7909582 - 7909524
Alignment:
Q  27 gtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttt 87  Q
    ||||| |||||||||||||||||  || |  ||||||||||||||||||||| ||||||||    
T  7909582 gtggcaaaatactcttaagcccaatgcat--tgcacgcctcagtcaataatcaataagttt 7909524  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 36338965 - 36338902
Alignment:
Q  28 tggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagtttacata 92  Q
    ||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||    
T  36338965 tggcgaaatactcttaaacc-agtgcttcgtgcacgcctcagtcaatattcgataagtttacata 36338902  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 44686198 - 44686131
Alignment:
Q  20 atccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagttt 87  Q
    ||||| ||||||||||||||||||||||||| || |  |||| |||||||||||||||||| ||||||    
T  44686198 atccgaggtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttt 44686131  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 19939410 - 19939357
Alignment:
Q  189 tttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatca 242  Q
    |||||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  19939410 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca 19939357  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 19970549 - 19970496
Alignment:
Q  189 tttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatca 242  Q
    |||||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  19970549 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca 19970496  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 20231851 - 20231783
Alignment:
Q  173 gtcaaaaatacttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 241  Q
    |||| ||| ||||| ||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20231851 gtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20231783  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 20243914 - 20243855
Alignment:
Q  182 acttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 241  Q
    ||||| ||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20243914 acttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20243855  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 20005149 - 20005204
Alignment:
Q  183 cttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagac 238  Q
    |||| ||||| |||||||||||||||||||| ||| || ||||||||||| |||||    
T  20005149 cttgagtttcgtcttccactaacaatctctattagcaaaactccaaagctgaagac 20005204  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 20264301 - 20264242
Alignment:
Q  182 acttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 241  Q
    ||||| ||||||||| ||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20264301 acttgagtttcttctcccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20264242  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 15051610 - 15051673
Alignment:
Q  20 atccggggtggcgaaatactcttaagcccagggcttcgtgcacgcctcagtcaataatcgataagt 85  Q
    ||||||| ||||||||||||||||| ||||  || |  |||||| |||||||||||||||||||||    
T  15051610 atccgggatggcgaaatactcttaaacccaatgcat--tgcacgtctcagtcaataatcgataagt 15051673  T

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