View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_16 (Length: 416)
Name: NF19301_low_16
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 40353511 - 40353107
Alignment:
| Q |
1 |
ttgaacaatgtaagtttgatcataaacttagtacaaaattgtttggagcggagcgatcgatggtactgaatttctctannnnnnncaaaaattaagcaat |
100 |
Q |
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| T |
40353511 |
ttgaacaatgtaagtttgatcataaacttagtacaaaattgtttggagcggagcaatcgatggtactgaatttctttattttttcaaaaaattaagcagt |
40353412 |
T |
|
| Q |
101 |
tga------gatttcatcgtatatagattatggagatagtgcaggaaatgaagaattgaattcatactagtgtgtcaatgtccctttattgttcatgttt |
194 |
Q |
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||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
40353411 |
tgaacttgagagttcttcgtatatagattatgaagatagtgcaggaaatgaagaattgaattcattctagtgtgtcaatgtccctttattgtttatgttt |
40353312 |
T |
|
| Q |
195 |
aatatatttaattttaatttccgaaggtttggatttttctttttagg--ataatgttaaagagatagatctactnnnnnnngcttgttaaaatatcaaaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
40353311 |
aatatatttaattttaatttccgaaggtttggatattt-tttttaggatataatgttaaagagatagatctact-aaaaaagcttgttaaaatttcaaaa |
40353214 |
T |
|
| Q |
293 |
acttggattcaaacgtctttccttttctctctttaatgtgtttggtatttgtgttttgattcataattgtttgattgttgttgctttgatgcagtgaaat |
392 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40353213 |
acttggattcaaacctctttccttttctctctttaatgtgtttggtatttgtgttttgactcataattgtttgattgttgttgctttgatgcagtgaaat |
40353114 |
T |
|
| Q |
393 |
acgtaat |
399 |
Q |
| |
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||||||| |
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| T |
40353113 |
acgtaat |
40353107 |
T |
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