View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_low_19 (Length: 405)
Name: NF19301_low_19
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 10858955 - 10858577
Alignment:
| Q |
10 |
attattctctgcaacaataaccatcagctcttcacagtgtttcacgtgtagatcttcaagtttcacaagatctttggctactgaggctgggaacaaactt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10858955 |
attattctctgcaacaataaccatcagctcttcacagtgtttcacgtgtagatcttcaagtttcacaagatctttggctactgaggctgggaacaaactt |
10858856 |
T |
|
| Q |
110 |
gtaaggcctttacagtcatcaacatatacttgttttagaagttcaattgttagaattccatgaggatcttcattccaaacattcttcaaatttggcaact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10858855 |
ataaggcctttacagtcatcaacatatacttgttttagaagttcaattgttagaattccatgaggatcttcattccaaacattctccaaatttggcaact |
10858756 |
T |
|
| Q |
210 |
gctctaaagtcaataccttcagggaaaaagggaagggcatcagggctggtcccttggttttcatttttctgtcttctgttatacgtctcacatcaaatat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10858755 |
gctctaaagtcaataccttcagggaaaaagggaagggcatcagggctggtcccttggttttcatttttctgtcttctgttatacgtctcacatcaaatat |
10858656 |
T |
|
| Q |
310 |
ggttttcacaaaaccacaatttcgaactgccaacttttccatttttgttaagaaaggaagtaaattggatggtagtact |
388 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10858655 |
ggttttcacagaactacaatttcgaactgccaatttttccatttttgttaagaaaggaagtaaattggatggtagtact |
10858577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University