View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_2 (Length: 531)
Name: NF19301_low_2
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 25 - 519
Target Start/End: Complemental strand, 14131003 - 14130509
Alignment:
| Q |
25 |
atgatatatatacaaaacaagcaatgctttatgaaattctctaacgtacgtatacgatgatgtcttatcctcttgctgccacaccttgttctcaaactaa |
124 |
Q |
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| T |
14131003 |
atgatatatatacaaaacaagcaatgctttatgaaattctctaacgtacgtatacgatgatgtcttatcctcttgctgccacaccttgttctcaaactaa |
14130904 |
T |
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| Q |
125 |
aaccataaacatggctactgttacatctacatctcttcctttcttcactccaaaaacctcaaatttccataacaagtcttgtttttctaaatctaatttc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14130903 |
aaccataaacatggctactgttacatctacatctcttcctttattcactccaaaaacctcaaatttccataacaagtcttgtttttctaaatctaatttc |
14130804 |
T |
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| Q |
225 |
tctactctcaaatgtaaagcatcatcatcaagtttttcagcatccatgttggattttgacttgtatgatcttctaggaattgatagttcatgtgatcagt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14130803 |
tctactctcaaatgtaaagcatcatcatcaagtttttcagcatccatgttggattttgacttgtatgatcttctaggaattgatagttcatgtgatcagt |
14130704 |
T |
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| Q |
325 |
cacagatcaagacggcgtatcgatctcttcagaaacgatgtcatcctgatattgctggtccttctggtcatgatatggctatcattcttaatgatgctta |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14130703 |
cacagatcaagacggcgtatcgatctcttcagaaacgatgtcatcctgatattgctggtccttctggtcatgatatggctatcattcttaatgatgctta |
14130604 |
T |
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| Q |
425 |
tgctattctttcggatccatttgctcgttttgcctatgataaggttaattaatttctcttatttcctttctttttagtttataattgtggagaat |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14130603 |
tgctattctttcggatccatttgctcgttttgcctatgataaggttaattaatttctcttatttcctttctttttagtttataattgtggagaat |
14130509 |
T |
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