View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_low_20 (Length: 400)
Name: NF19301_low_20
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 123 - 385
Target Start/End: Original strand, 29293836 - 29294094
Alignment:
| Q |
123 |
gaagttgtgtacaagtaagacttgattcttactaagaaagatacttgatgaccttcaataagcttagctcataccaagnnnnnnnncaatgagatgacct |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
29293836 |
gaagttgtgtacatgtaagacttgattcttgctaagaaagatacttgatgaccttcaataagct-----cataccaagaaaaaaaacaatgagatgacct |
29293930 |
T |
|
| Q |
223 |
tctactttaacttcttatcttgacctgcagtgcagacccacttttgcacacattcatttgtttctatcaaacaaagtgcgatgctaatttttctaggttg |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29293931 |
tctactttaacttcttatcttgacctggagtgcagacccacttttgcacacattcatttgtttctatcaaacaaagtgcgatgctaatttttctaggttg |
29294030 |
T |
|
| Q |
323 |
caaaagttgtgagtagtataggcacagcacatgaca-ttgcaggttatgtcactatagagactg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
29294031 |
caaaagttgtgagtagtataggcacagcacatgacatttgcaggtaatgtcactatagagactg |
29294094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 29293725 - 29293760
Alignment:
| Q |
17 |
atcaagagagtaaaattatatgatgtaaaataatgt |
52 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29293725 |
atcaagagagtaaaattatatgatgtgaaataatgt |
29293760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University