View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19301_low_21 (Length: 389)

Name: NF19301_low_21
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19301_low_21
NF19301_low_21
[»] chr5 (10 HSPs)
chr5 (18-374)||(41569817-41570173)
chr5 (18-267)||(41711694-41711943)
chr5 (19-267)||(42130672-42130920)
chr5 (19-268)||(42125447-42125696)
chr5 (19-268)||(34238764-34239013)
chr5 (19-231)||(42118846-42119058)
chr5 (81-268)||(34230709-34230896)
chr5 (92-262)||(41446141-41446311)
chr5 (92-164)||(41433417-41433489)
chr5 (18-76)||(34230913-34230971)
[»] chr6 (1 HSPs)
chr6 (19-268)||(25520929-25521178)
[»] chr2 (1 HSPs)
chr2 (19-267)||(12250268-12250516)
[»] chr4 (1 HSPs)
chr4 (18-265)||(11120220-11120467)
[»] chr3 (1 HSPs)
chr3 (19-268)||(8524902-8525151)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 41570173 - 41569817
Alignment:
Q  18 aagacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatg 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41570173 aagacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatg 41570074  T
Q  118 agcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41570073 agcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtg 41569974  T
Q  218 acaccatgccatgaacaacaatttgtctcatttttccatgttgatgttttctgaggttgttccagacaagcatagtttgtatatgtagtgaaggaagact 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41569973 acaccatgccatgaacaacaatttgtctcaattttccatgttgatgttttctgaggttgttccagacaagcatagtttgtatatgtagtgaaggaagact 41569874  T
Q  318 tgaattgaagcaaggaatagctatcttcaggatgacataacaaattagaagatgaac 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41569873 tgaattgaagcaaggaatagctatcttcaggatgacataacaaattagaagatgaac 41569817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 41711943 - 41711694
Alignment:
Q  18 aagacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatg 117  Q
    |||||| ||||||||||| |||||||  ||| | |||||||| |||||| |||| |||||   |||||||||||| |||||||||||||| |||||||||    
T  41711943 aagacatgtcaagatgtgcaagactcaaaaaccgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatg 41711844  T
Q  118 agcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtg 217  Q
    | ||||||| |||||||| || |||||||  | | ||||||||||||  ||||||||||||| ||| |||| |||||||||| |||| | ||| || |||    
T  41711843 aacaagatggaaaagagtattattaggatggaatataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtg 41711744  T
Q  218 acaccatgccatgaacaacaatttgtctcatttttccatgttgatgtttt 267  Q
    |||||  ||||||| |||||||  ||||||||||||||||||| ||||||    
T  41711743 acaccgggccatgagcaacaatcagtctcatttttccatgttgttgtttt 41711694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 42130672 - 42130920
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||||||||||||||||||||  |||||||| ||||| | |||| ||||  ||||   |||||||||||| |||||||||||||| ||||||||||    
T  42130672 agacaagtcaagatgtgtaagactctgaaatccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatga 42130771  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
     ||||||||||||| ||  | |||||||  | | |||||  ||||| |||||||||||||| |||  |||||||| |||||||||| | ||| |||||||    
T  42130772 acaagatgaaaaagggtactattaggattgaatgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtga 42130871  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgtttt 267  Q
    | |||| |||||| || ||||  ||| ||||||||||||||| ||||||    
T  42130872 cgccattccatgagcagcaatcagtcccatttttccatgttgctgtttt 42130920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 42125447 - 42125696
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    ||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||  ||||   |||||||||||| |||||||||||||| ||| ||||||    
T  42125447 agacaagtcaagatgtgcaagactcataaacccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatga 42125546  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
     ||||||  ||||| ||  |||||||||  | |||||||||||||| |||||||||||| | ||| ||||||||| ||| || ||  |  || |||||||    
T  42125547 acaagattgaaaagggtactgttaggatgtagtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtga 42125646  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgttttc 268  Q
    |||||| |||||| || ||||  ||| ||||||||||||||| |||||||    
T  42125647 caccattccatgagcagcaatcagtcccatttttccatgttgctgttttc 42125696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 34239013 - 34238764
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||||||||||||||||||||||||| |  ||||||| |||||  |||| |||    |||||| |||||| |||||||||||||| ||||||||||    
T  34239013 agacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatga 34238914  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
     ||| ||  ||||| ||  | |||||||  | | ||||||||| || |||||| |||||||  || ||||| ||| ||||||| || | ||| |||||||    
T  34238913 acaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtga 34238814  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgttttc 268  Q
    ||||||||||||| || ||||  ||| ||||||||||||||| |||||||    
T  34238813 caccatgccatgagcagcaatcagtcccatttttccatgttgctgttttc 34238764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 42118846 - 42119058
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||||||||||||||||||||  ||| |||||||||| |||||| |||   ||   | |||||| ||||   | |||||| |||| ||||||||||    
T  42118846 agacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatga 42118945  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
     ||||||| ||||| || ||||||||||  | ||||||   ||||| || | ||||||||| ||||||||||||| ||||||||||   | | |||| ||    
T  42118946 acaagatggaaaagggtattgttaggatgtaatttaccagtaaggcgttaaaagccaaggttgagaccaatcacgtgaccagagactctgacacacgcga 42119045  T
Q  219 caccatgccatga 231  Q
    |||||||||||||    
T  42119046 caccatgccatga 42119058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 34230896 - 34230709
Alignment:
Q  81 agaaatcattgtgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtc 180  Q
    |||||| |||||  |||||||||||   ||| || ||||||||||| ||||| ||  | |||||||  | | ||||||||| || ||||||||||||||     
T  34230896 agaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggtt 34230797  T
Q  181 gagaccaatcacgcgaccagagacagcgtcgcacgtgacaccatgccatgaacaacaatttgtctcatttttccatgttgatgttttc 268  Q
     || ||||| ||| ||||||| || | ||| |||||||||||||||||||| || ||||  ||| ||||||||||||||| |||||||    
T  34230796 aaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttc 34230709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 41446141 - 41446311
Alignment:
Q  92 tgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatca 191  Q
    |||| ||||||||||| ||||||||||| |||||||||||| ||  |||| |||| |||  |||||||||||   |  ||||  ||||| |  ||||| |    
T  41446141 tgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaatta 41446240  T
Q  192 cgcgaccagagacagcgtcgcacgtgacaccatgccatgaacaacaatttgtctcatttttccatgttgat 262  Q
    || ||||||| |  | ||| || ||||||||| ||||||| ||||||| |||  |||||| ||||||||||    
T  41446241 cgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttgat 41446311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 41433417 - 41433489
Alignment:
Q  92 tgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggc 164  Q
    |||| ||||||||||| ||||||||||| |||||||||||| ||  |||| |||| |||  ||||||||||||    
T  41433417 tgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggc 41433489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 34230971 - 34230913
Alignment:
Q  18 aagacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggag 76  Q
    |||||||||| ||||||||||||||| |||| || ||||||| |||||| |||| ||||    
T  34230971 aagacaagtcgagatgtgtaagactcataaacccgccaaacttagaatgaaaatgggag 34230913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 25521178 - 25520929
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||| ||||||||||||||||  ||| |||||||||| || ||| |||| ||||     ||||||||||| |||||||||||||  ||| | ||||    
T  25521178 agacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatga 25521079  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
    |||||||| ||||||||  | |||||||  | | ||||||| |||| |||||||||||||| ||| ||||||||||||||| |    | |||||| ||||    
T  25521078 gcaagatggaaaagagtactattaggatggaatataccttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtga 25520979  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgttttc 268  Q
    ||||||||||||| || ||||  ||| ||| ||||||||||| |||||||    
T  25520978 caccatgccatgagcagcaatcagtcccatatttccatgttgctgttttc 25520929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 12250268 - 12250516
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||||||||||||||||| |    ||||||||||||| |||||| |||| ||||||  |||||||||||  |||||||||||||| ||||||||||    
T  12250268 agacaagtcaagatgtgtaagattaaagaatccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatga 12250367  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
    |||||||  ||||| ||  | ||||| |  | | |||| | ||||| ||||  |||||||||||| ||||||||  ||||| |||  | ||| || ||||    
T  12250368 gcaagatcgaaaagggtactattaggttgtaatataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtga 12250467  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgtttt 267  Q
    ||||||||||||| || ||||  ||| |||||| |||||||| ||||||    
T  12250468 caccatgccatgagcagcaatcagtcccattttgccatgttgctgtttt 12250516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 11120220 - 11120467
Alignment:
Q  18 aagacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatg 117  Q
    ||||||||| ||||||||||||||||  ||| |||||||||| |||||| |||   |||  | |||||| |||||    ||||||||||| |||||||||    
T  11120220 aagacaagtaaagatgtgtaagactctgaaacccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatg 11120319  T
Q  118 agcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtg 217  Q
    | ||||||| ||||| ||  | || ||||  | | | |||||||| | |||||||||||| | ||| |||||||||||||||||||  | ||||||||||    
T  11120320 aacaagatggaaaagggtactattcggatgtaatatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtg 11120419  T
Q  218 acaccatgccatgaacaacaatttgtctcatttttccatgttgatgtt 265  Q
    ||||||| |||||| || ||||  ||| ||||||||||||||| ||||    
T  11120420 acaccattccatgagcagcaatcagtcccatttttccatgttgttgtt 11120467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 8524902 - 8525151
Alignment:
Q  19 agacaagtcaagatgtgtaagactcgtaaatccaccaaactgagaatgcaaattggagttgtagaaatcattgtgagaaaggttgagtgattggagatga 118  Q
    |||||||||||||||||| ||||||  ||| ||||||||||  ||||| ||||  |||    |||||||||||| || ||||||||||  ||| | || |    
T  8524902 agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataa 8525001  T
Q  119 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggctttcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 218  Q
    |||||||| ||||| ||  |||||||||  | | | |||||||| | |||||||||||||| ||| ||||||||| |||||  ||  | ||| |||||||    
T  8525002 gcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtga 8525101  T
Q  219 caccatgccatgaacaacaatttgtctcatttttccatgttgatgttttc 268  Q
    |||||| |||||| || ||||   |||||||||||||||||| |||||||    
T  8525102 caccatcccatgagcagcaatcaatctcatttttccatgttgctgttttc 8525151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University