View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_low_23 (Length: 371)
Name: NF19301_low_23
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 4095132 - 4094807
Alignment:
| Q |
17 |
aaagaagcttcctgtggtgaattgtgctccacaattttatcgaaggaaacaacatcgtcatcatattgtgctaagaccaacgaaactccatcatcatttg |
116 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||| |||||||||| |
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| T |
4095132 |
aaagaagcttcttgtggtgaattgtgctccaaaattttatcgaaggaaacatcatcgtcatcacattgtgctaagagcaaggaaactccgtcatcatttg |
4095033 |
T |
|
| Q |
117 |
gattgaactcgatgattggttttggagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgag |
216 |
Q |
| |
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||||||| | || || |||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||| || | ||||||||||||||||||||| |
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| T |
4095032 |
gattgaattggaggaatggtttaggagaatccgaaggccaaacgatgttaccagctaaagggaggaagtgttgtagagttaaagagagtgaagatttgag |
4094933 |
T |
|
| Q |
217 |
tcttggaacaaggttttgaaagaagaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactgggtgaaatcttagccaattc |
316 |
Q |
| |
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| |||||||||| |||| ||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| || || ||||||||||||||| | |
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| T |
4094932 |
ttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatcttagccaaata |
4094833 |
T |
|
| Q |
317 |
aagtctaagaaagtgagaggaagaga |
342 |
Q |
| |
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|||| || || |||||||| ||||| |
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| T |
4094832 |
tagtcaaaaaatgtgagagggagaga |
4094807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 41 - 313
Target Start/End: Complemental strand, 4122133 - 4121861
Alignment:
| Q |
41 |
tgctccacaattttatcgaaggaaacaacatcgtcatcatattgtgctaagaccaacgaaactccatcatcatttggattgaactcgatgattggttttg |
140 |
Q |
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||||||| |||||||||||||||||||| ||| |||||| ||| |||||||| ||| |||||||| || |||||||||||||||| |||||||||||||| |
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| T |
4122133 |
tgctccaaaattttatcgaaggaaacaatatcatcatcacattatgctaagagcaaggaaactccgtcttcatttggattgaactggatgattggttttg |
4122034 |
T |
|
| Q |
141 |
gagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgagtcttggaacaaggttttgaaagaa |
240 |
Q |
| |
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|||||| ||||||||||||||||||||| |||| || | || | |||||||| |||||||||||||||||||||| ||||||||||||||| || || |
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| T |
4122033 |
gagaattagaaggccaaacgatgttaccagctaaaggtgggaatttttggagggttaaagagagtgaagatttgagttttggaacaaggttttcaacaaa |
4121934 |
T |
|
| Q |
241 |
gaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactgggtgaaatcttagccaa |
313 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
4121933 |
gaaagaagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaaccttagccaa |
4121861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 4102664 - 4102341
Alignment:
| Q |
17 |
aaagaagcttcctgtggtgaattgtgctccacaattttatcgaaggaaacaacatcgtcatcatattgtgctaagaccaacgaaactccatcatcatttg |
116 |
Q |
| |
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||||||||||| |||||||| |||||||||| || |||||||||||||||| |||||||| | |||||| ||||| ||| |||||||||||||||| |
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| T |
4102664 |
aaagaagcttcttgtggtgatttgtgctccaaaactttatcgaaggaaacatcatcgtcagtacattgtgttaagagcaaggaaactccatcatcat--- |
4102568 |
T |
|
| Q |
117 |
gattgaactcgatgattggttttggagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgag |
216 |
Q |
| |
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|| || ||||||||||||| ||||||||||||||||||| |||| ||||| |||| |||||||| ||||||||||||| ||||||| |
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| T |
4102567 |
-------------gaatgattttggagaatcaaaaggccaaacgatgttaccagctaaagggaggaagttttggagggttaaagagagtgaatatttgag |
4102481 |
T |
|
| Q |
217 |
tcttggaacaaggttttgaaagaagaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactgggtgaaatcttagccaattc |
316 |
Q |
| |
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| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| | |
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| T |
4102480 |
ttttggaacaaggttttcaaaaaagtaagaagggtgtgattgtgaatttgggagggtgtagaagtagatatgttcacctgggtgaaaccttagccaaaac |
4102381 |
T |
|
| Q |
317 |
aagtctaagaaagtgagaggaagagacaattggtttgcag |
356 |
Q |
| |
|
||||| ||||||||||| | ||||| ||||||||||||| |
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| T |
4102380 |
aagtcaaagaaagtgagtgagagagataattggtttgcag |
4102341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 291
Target Start/End: Complemental strand, 4195899 - 4195706
Alignment:
| Q |
98 |
gaaactccatcatcatttggattgaactcgatgattggttttggagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagggcta |
197 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||| |||| || |||||||||||||||| || |
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| T |
4195899 |
gaaactccatcatcatttggattgaattggatgaatggttgtggagaatcagaaggccaaacgattttaccagctaaaggaagaaagtgttggagggtta |
4195800 |
T |
|
| Q |
198 |
aagagagtgaagatttgagtcttggaacaaggttttgaaagaagaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttc |
291 |
Q |
| |
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|||||| |||||||||||| |||||||||| ||||| || ||||||| || |||||| |||||||||||||||||||||||||| | |||||| |
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| T |
4195799 |
aagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttc |
4195706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 94 - 313
Target Start/End: Complemental strand, 4250680 - 4250461
Alignment:
| Q |
94 |
caacgaaactccatcatcatttggattgaactcgatgattggttttggagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagg |
193 |
Q |
| |
|
|||||||||||||||||| || |||| || | ||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
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| T |
4250680 |
caacgaaactccatcatcgttgggatcaaattgaatgatgggttttgaagaatcagaaggccaaacgatgttaccagctaaagggagaaaatgttggagg |
4250581 |
T |
|
| Q |
194 |
gctaaagagagtgaagatttgagtcttggaacaaggttttgaaagaagaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaa |
293 |
Q |
| |
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| |||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
4250580 |
gttaaagagagtgatgatttgagatttggaacaatcgtttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtagaagaaaactcgttcta |
4250481 |
T |
|
| Q |
294 |
ctgggtgaaatcttagccaa |
313 |
Q |
| |
|
|||| || || ||||||||| |
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| T |
4250480 |
ctggatggaaccttagccaa |
4250461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 291
Target Start/End: Complemental strand, 4188956 - 4188817
Alignment:
| Q |
152 |
ggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgagtcttggaacaaggttttgaaagaagaaagtagggt |
251 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||||||| |||||||||||| ||| |||| ||||||| || |||||||||||||||| ||||| |
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| T |
4188956 |
ggccaaacaattttaccagctaaagggagaaagtgttggagggttaaagagagtgatgatctgagaattggaactagtttttgaaagaagaaagaagggt |
4188857 |
T |
|
| Q |
252 |
gtgattgtgaatttgggagggtgtagaagaagatacgttc |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |
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| T |
4188856 |
gtgattgtgaatttgggagggtgtaaaagaagattcgttc |
4188817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 313
Target Start/End: Complemental strand, 4233596 - 4233433
Alignment:
| Q |
150 |
aaggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgagtcttggaacaaggttttgaaagaagaaagtagg |
249 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| | ||||| ||||||||||||||||||||| |||||||||| || | |||||||||| ||| |
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|
| T |
4233596 |
aaggccaaacgatgttaccagctaaagggagaaagtccttgagggttaaagagagtgaagatttgagaattggaacaagcttcttgaagaagaaagaagg |
4233497 |
T |
|
| Q |
250 |
gtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactgggtgaaatcttagccaa |
313 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| | |||||| ||||| || || ||||||||| |
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| T |
4233496 |
gtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaaccttagccaa |
4233433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 297
Target Start/End: Complemental strand, 4192117 - 4191951
Alignment:
| Q |
131 |
attggttttggagaatcagaaggccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgagtcttggaacaaggt |
230 |
Q |
| |
|
||||||| | |||| || |||||||||| || ||||| |||| ||||||||||||| ||||| ||||||| ||||||||||||| ||| |||||| | |
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|
| T |
4192117 |
attggttgttgagactcggaaggccaaattatcttaccagctaaagggagaaagtgtttgagggttaaagagggtgaagatttgagaattgtaacaagct |
4192018 |
T |
|
| Q |
231 |
tttgaaagaagaaagtagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactgg |
297 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| ||||||||||||||||||| | |||||| ||||| |
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|
| T |
4192017 |
tttggaagaagaaagaagggtgtgattgtgaacttgggagggtgtagaagaaaacacgttccactgg |
4191951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 154 - 285
Target Start/End: Complemental strand, 4241380 - 4241249
Alignment:
| Q |
154 |
ccaaacgatgttaccggctatcgggagaaagtgttggagggctaaagagagtgaagatttgagtcttggaacaaggttttgaaagaagaaagtagggtgt |
253 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| | || || | |
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| T |
4241380 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
4241281 |
T |
|
| Q |
254 |
gattgtgaatttgggagggtgtagaagaagat |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
4241280 |
gattgtgaatttgggagggtgtagaataagat |
4241249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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