View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19301_low_24 (Length: 361)

Name: NF19301_low_24
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19301_low_24
NF19301_low_24
[»] chr6 (2 HSPs)
chr6 (16-210)||(32679640-32679834)
chr6 (137-184)||(32679630-32679676)
[»] chr3 (3 HSPs)
chr3 (19-173)||(2230456-2230609)
chr3 (176-255)||(2230576-2230655)
chr3 (279-347)||(2230704-2230772)
[»] chr8 (3 HSPs)
chr8 (19-120)||(44806694-44806795)
chr8 (257-347)||(44806913-44807003)
chr8 (175-242)||(44806806-44806873)
[»] chr2 (3 HSPs)
chr2 (46-148)||(28136025-28136122)
chr2 (257-347)||(28135839-28135930)
chr2 (175-255)||(28135955-28136035)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 32679834 - 32679640
Alignment:
Q  16 atgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  32679834 atgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaag 32679735  T
Q  116 ataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679734 ataacaaacaagtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 32679640  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
Q  137 ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt 184  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  32679676 ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt 32679630  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 2230456 - 2230609
Alignment:
Q  19 tgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagata 118  Q
    ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2230456 tgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatgatatttgagata 2230555  T
Q  119 acaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc 173  Q
     |||| || |||| | ||  |||||||||| | | ||||||||| ||||||||||    
T  2230556 gcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc 2230609  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
Q  176 ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 255  Q
    |||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  2230576 ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc 2230655  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
Q  279 ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 347  Q
    |||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  2230704 ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc 2230772  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 44806694 - 44806795
Alignment:
Q  19 tgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagata 118  Q
    ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  44806694 tgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgatatttgagata 44806793  T
Q  119 ac 120  Q
    ||    
T  44806794 ac 44806795  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
Q  257 tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 347  Q
    |||||||| |||| | ||||||||||  || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  44806913 tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc 44807003  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
Q  175 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca 242  Q
    |||||| |||| || ||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  44806806 tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca 44806873  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 28136122 - 28136025
Alignment:
Q  46 tttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatcc 145  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  28136122 tttttgcatatatggagtctctttcttcatgtagct-----gttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatcc 28136028  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
Q  257 tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 347  Q
    |||||||||||||  | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||    
T  28135930 tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc 28135839  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
Q  175 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 255  Q
    ||||||||||| |  ||||||| | |||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||||||    
T  28136035 tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc 28135955  T

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