View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_28 (Length: 331)
Name: NF19301_low_28
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 9409494 - 9409197
Alignment:
| Q |
13 |
agaatatggtggtgatacannnnnnnggacggatccatggttgagtggtattctttttagtgatagatttgataggttgtttgagttaaccgacaaccct |
112 |
Q |
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| T |
9409494 |
agaaaatggtggtgatacatttttttggacggatccatggttgagtggtattctttttagtgatagatttgataggttgtttgagttaactgacaaccct |
9409395 |
T |
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| Q |
113 |
ttgatgtcagtcgccgatatgtttgggtttgggtggggtgaggggcagggacttggaagtgacgatggaagttgtttgcccggggagcgaatgttatggg |
212 |
Q |
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| T |
9409394 |
ttgatgtcagtggccgatatgtttgggtttgggtggggtgaggggcagggacttggaagtgacggtggaagttgtttgcgcggggagcaaatgttatggg |
9409295 |
T |
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| Q |
213 |
agtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatacgtgggaatggtatttagatccttctaagggttatactgttcgcggt |
310 |
Q |
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| T |
9409294 |
attgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatacgtgggaatggtatttagatccttctaagggttatactgtttgcggt |
9409197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 288
Target Start/End: Complemental strand, 33217930 - 33217698
Alignment:
| Q |
57 |
gtggtattctttttagtgatagatttgataggttgtttgagttaaccgacaaccctttgatgtcagtcgccgatatgtttgggtttgggtggggtgaggg |
156 |
Q |
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| T |
33217930 |
gtggtattcctcttagtgttagatttcatacgttatttgagttaactgacaaccctttcatgtaagttgatgatatgtatgcggttggttggggtaaggg |
33217831 |
T |
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| Q |
157 |
gcagggacttggaa---gtgacgatggaagttgtttgcccggg--gagcgaatgttatgggagtgttatgttttgcttcttgatgttgttttgcaggttg |
251 |
Q |
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| T |
33217830 |
agagaggcttggaaccagagacgatg----ttgtttgcatgggaggagaaaatattatggtagtgttgtgatatccttcttgatgttgttttacaggttg |
33217735 |
T |
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| Q |
252 |
acgtggtggatacgtgggaatggtatttagatccttc |
288 |
Q |
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| T |
33217734 |
atgtggtggatacatggaaatggtatatagatccttc |
33217698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 20122724 - 20122762
Alignment:
| Q |
210 |
gggagtgttatgttttgcttcttgatgttgttttgcagg |
248 |
Q |
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| T |
20122724 |
gggagtgttctgttttgcttcttaatgttgttttgcagg |
20122762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 15186287 - 15186198
Alignment:
| Q |
212 |
gagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatacgtgggaatggtatttagatccttctaagggttatact |
301 |
Q |
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| T |
15186287 |
gagtgttgtgttttacttcttgatgttgttttgcagcatgatgtggtggatacgtggaaataacatttagatccttctaaaggttatact |
15186198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 22158337 - 22158299
Alignment:
| Q |
210 |
gggagtgttatgttttgcttcttgatgttgttttgcagg |
248 |
Q |
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| T |
22158337 |
gggagtgttatgttatgcttcttaatgttgttttgcagg |
22158299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 26385685 - 26385782
Alignment:
| Q |
204 |
tgttatgggagtgttatgttttgcttcttgatgttgttttgcaggttgacgtggtggatacgtgggaatggtatttagatccttctaagggttatact |
301 |
Q |
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| T |
26385685 |
tgttaggggagtgttgtgctttgtttcttgatgttgttttgtaggttgatgtggtggatacttggaaatgacatgtagatcctcctaaaagttatact |
26385782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 26385506 - 26385565
Alignment:
| Q |
43 |
ggatccatggttgagtggtattctttttagtgatagatttgataggttgtttgagttaac |
102 |
Q |
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| T |
26385506 |
ggatccgtggttgagtgatattccttttagtgttagatttggtaggttatttgagttaac |
26385565 |
T |
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