View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_3 (Length: 509)
Name: NF19301_low_3
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 470
Target Start/End: Complemental strand, 33355784 - 33355329
Alignment:
| Q |
17 |
tcttactgtgtgaaggagaacaaagagtgtgtgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgg |
116 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355784 |
tcttactgcgttaaggagaacaaagagtgtgtgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgg |
33355685 |
T |
|
| Q |
117 |
gactcatgagtttagtatcatggggagttgctgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355684 |
gactcatgagtttagtatcatggggagttgctgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctcct |
33355585 |
T |
|
| Q |
217 |
tacttgggtagcagggttagtcaaatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355584 |
tacttgggtagcagggttagtcaaatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacttttttt |
33355485 |
T |
|
| Q |
317 |
cacattctaatacttactagaaaaatccattggatcatgttagttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtc |
414 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33355484 |
cacattataatacttactagcaaaatccattggatcatgttagttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtc |
33355385 |
T |
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| Q |
415 |
aaacatgtgtaggcgctcaacaccaacatgatacaaacacatgtagttacttttaa |
470 |
Q |
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||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||| |
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| T |
33355384 |
aaacatgtgtaggcgttcaacatccacatgatacaaacacatgtagttacatttaa |
33355329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 7217385 - 7217557
Alignment:
| Q |
65 |
tacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataa |
164 |
Q |
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||||||| |||||||| |||||| | | ||| |||| ||||||| ||| ||| |||| |||||| | | ||||| ||||||||||||||||| || | |
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| T |
7217385 |
tacttcagtgactgtctctgcaatgttaatgataacatttcattcacttttggattcatcagtttaatttgttggggtgttgctgaaattcctcaaatta |
7217484 |
T |
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| Q |
165 |
tcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagt |
237 |
Q |
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|||| | |||||| ||||| |||||||| |||| ||| |||||| ||||||||||| || |||||||| |
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| T |
7217485 |
tcactaattttcgtgctaagtctagccatggtgtttctattgtctttcttcttacttgggttgctgggttagt |
7217557 |
T |
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