View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_30 (Length: 320)
Name: NF19301_low_30
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_30 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 50 - 320
Target Start/End: Complemental strand, 10706037 - 10705767
Alignment:
| Q |
50 |
tgtgctaaggcctttgatatctgttgatatagtttggtgatcgatgccagatagaattatgattctacggccaagtgccaacctaatatgtcgaactctg |
149 |
Q |
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| T |
10706037 |
tgtgctaaggcctttgatatctgttgatatagtttggtgatcgatgccagatagaattatgattctacggccaagtgccaacctaatatgtcgaactctg |
10705938 |
T |
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| Q |
150 |
acttaagatgtcatgttctcatatttgttcggctcacctagaaagtaacgaatgtatgaatggcgtgcttatgtaagaggcattcccctcatcctctttt |
249 |
Q |
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| T |
10705937 |
gcttaagatgtaatgttctcatatttgttcggctcacctagaaagtaacgaatgtatgaatggcgtgcttatgtaagaggcattcccctcatcctctttt |
10705838 |
T |
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| Q |
250 |
agcttgcaaaattgaggaagctgtatttaatagttatgcacttctgcccttcgcatcgactaaatattatc |
320 |
Q |
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| T |
10705837 |
agcttgcaaaattgaggaagctgtatttaatagttatgcacttctgcccttcgcatcgactaaatattatc |
10705767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 6388751 - 6388801
Alignment:
| Q |
96 |
ccagatagaattatgattctacggccaagtgccaacctaatatgtcgaact |
146 |
Q |
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| T |
6388751 |
ccagatagaattttgattctacggccaagtgccaacctaatatgttgaact |
6388801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 6388689 - 6388731
Alignment:
| Q |
16 |
atattatcacaaagaaatcaacatcattgatggttgtgctaag |
58 |
Q |
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| T |
6388689 |
atattatcacaaagaaatcaacatcattgataattgtgctaag |
6388731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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