View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_low_36 (Length: 279)
Name: NF19301_low_36
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 31828230 - 31828471
Alignment:
| Q |
20 |
atttgaacaacttcaaataaaacatatatgaaatatttattttcaggtaaagaattttaataatattgcaaaaagtgaggaagatataagtgcctatgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31828230 |
atttgaacaacttcaaataaaacatatatgaaatatttattttcaggtaaaggattttaataatattgcaaaaagtgaggaagatataagtgcctatgct |
31828329 |
T |
|
| Q |
120 |
gattatgtgggtaagatttctttttcaggcttcccttctttgatgtcttctactacctattttatactaatctataannnnnnnngcaggatcctcaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31828330 |
gattatgtgggtaagatttctttttcaggcttcccttctttgatgtcttctactacctattttatactaatctataattttttttgcaggatcctcaatt |
31828429 |
T |
|
| Q |
220 |
atgcttggcatagctttgacatctatattaatatctgatccc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31828430 |
atgcttggcatagctttgacatctatactaatatctgatccc |
31828471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 32116667 - 32116879
Alignment:
| Q |
21 |
tttgaacaacttcaaataaaacatatatgaaatatttattttcaggtaaagaattttaataatattgcaaaaagtgaggaagatataagtgcctatgttg |
120 |
Q |
| |
|
|||| ||||||| | ||||||| ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
32116667 |
tttgtacaacttaagataaaacttatatgaaatatttaatttcaagtaaaggattttaatt---ttgcaaaaagtgaggaagatataagtgcctatgctg |
32116763 |
T |
|
| Q |
121 |
attatgtgggtaagatttctttttcaggcttcccttctttgatgtcttctactacctattttatactaatctataa-nnnnnnnngcaggatcctcaatt |
219 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32116764 |
attatctgggtaagatttctttttcatgcttcccttctttgatgtcttctactacctattttatactaatctataattttttttagcaggatcctcaatc |
32116863 |
T |
|
| Q |
220 |
atgcttggcatagctt |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32116864 |
atgcttggcatagctt |
32116879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 39160548 - 39160665
Alignment:
| Q |
52 |
atatttattttcaggtaaagaattttaataatattgcaaaaagtgaggaagatataagtgcctatgttgattatgtgggtaagatttctttttcaggctt |
151 |
Q |
| |
|
||||||||||||||||| || |||| |||| ||||| |||| |||||||||||||| || |||| || |||||| ||||||||||| ||||||| ||| |
|
|
| T |
39160548 |
atatttattttcaggtagaggatttcaata---ttgcagaaagcgaggaagatataagcgcttatgctggttatgtaggtaagatttc-ttttcagactt |
39160643 |
T |
|
| Q |
152 |
cccttctttgatgtcttctact |
173 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
39160644 |
caattctttgatgtcttctact |
39160665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 2605947 - 2606003
Alignment:
| Q |
81 |
aatattgcaaaaagtgaggaagatataagtgcctatgttgattatgtgggtaagatt |
137 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| |||| | |||||||||||||||| |
|
|
| T |
2605947 |
aatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagatt |
2606003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University