View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_37 (Length: 277)
Name: NF19301_low_37
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_37 |
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| [»] scaffold0894 (1 HSPs) |
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| [»] scaffold0716 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 23348675 - 23348423
Alignment:
| Q |
8 |
ccaagaatattaatatacatacttgaacaagtcatgttagcactttaaatcaattatcaaaccctaaaagcaatcatggttcagaatcaacgtttgaatc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23348675 |
ccaaaaatattaatatacatacttgaacaagtcacgttagcactttaaatcaattatcaaaccctaaaagcaatcatggttcagaatcaacgtttgaatc |
23348576 |
T |
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| Q |
108 |
agtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaag-caaaaatagaaatcccatgagtggttttaattttga |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23348575 |
agtattccaaattggtttcgaatgatatccaatctaataaaataaaaaccgattaatcagaagccaaaaatagaaatcccatgagtggttttaattttga |
23348476 |
T |
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| Q |
207 |
aaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttac |
260 |
Q |
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| T |
23348475 |
aaccaaatcaaaagca-atatagatcagtattgaattttgataatggaacttac |
23348423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 11233199 - 11233048
Alignment:
| Q |
74 |
aaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaa |
173 |
Q |
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| T |
11233199 |
aaagtaatcatgggtcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaa |
11233105 |
T |
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| Q |
174 |
aaatagaa-atcccatgagtggttttaattttgaaaccaaatcaaaatcacatatag |
229 |
Q |
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| T |
11233104 |
aaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatatag |
11233048 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 40934202 - 40934051
Alignment:
| Q |
74 |
aaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaa |
173 |
Q |
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|||| |||||||| |||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||| |
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| T |
40934202 |
aaagtaatcatgggtcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaa |
40934108 |
T |
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| Q |
174 |
aaatagaa-atcccatgagtggttttaattttgaaaccaaatcaaaatcacatatag |
229 |
Q |
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|||| || |||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
40934107 |
aaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatatag |
40934051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 76 - 24
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
76 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaatatt |
24 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 7321 - 7269
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
7321 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaatatt |
7269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 246065 - 246013
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
246065 |
catgagtggttttaatttggaaactaaatcaaatgcacatataggtcaatatt |
246013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 37282133 - 37282185
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
37282133 |
catgagtggttttaatttggaaactaaatcaaatgcacatataggtcaatatt |
37282185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 11136541 - 11136593
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
11136541 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaatatt |
11136593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 7314022 - 7314074
Alignment:
| Q |
186 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtatt |
238 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |
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| T |
7314022 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaatatt |
7314074 |
T |
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