View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_4 (Length: 496)
Name: NF19301_low_4
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 24081057 - 24081514
Alignment:
| Q |
18 |
cacctgttgcctgtcctcctccagcatccgtatttgctgcacctcctcctccaccattcgttttttctgcacctcctcctccacca---tccgtctttgc |
114 |
Q |
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| T |
24081057 |
cacctgttgcatgtcctcctccaccatccgtatttgttgcacctcctcctccacctttcgtatttgctgcaccacctcctccaccaccatccgtctttgc |
24081156 |
T |
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| Q |
115 |
agcaccttctcctccaccacccccaaccaatgaaggtttttgggaaccacttctgaatgtgattagaggctggaataggccaatgactattattgtatct |
214 |
Q |
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| T |
24081157 |
aacaccttctcctccaccacccccaaccaatgaaggtttttggga------------tgtgattagaggctggagtaggccaatgactattattgtctct |
24081244 |
T |
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| Q |
215 |
gtggttacactcttgggtggattggggtgttgtggtagaagatatcgtcggggaagaggacatcttcaaaatgtggaagacgtaacatctgcaatttctg |
314 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24081245 |
gtggttacactcttggttggattggggtgttgtggtagaagatatcgtcggggaagaggacatcttcaagatgtggaagacgtaacatctgcaatttctg |
24081344 |
T |
|
| Q |
315 |
atctataaaaacatatattagtaattccta-tgctacttgagaggacaataaaacttatatttaatatgttttaaattccggtgaaagttttatcaaaac |
413 |
Q |
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| T |
24081345 |
atctataaaaacatatattagtaattcctattgctacttgagacgacaacaaaacttatctttaatatgttttaaatttgggtgaaagttttatcaaaac |
24081444 |
T |
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| Q |
414 |
ataaaaacatatatcattggttttattatgctattgctaccataccatttcagtctttcgatgttctcctat |
485 |
Q |
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| T |
24081445 |
ataaaaac--atatcattggttttattatgctattgctactataccatttcagtctttcgatgttctcctat |
24081514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 29109561 - 29109476
Alignment:
| Q |
174 |
tgattagaggctggaataggccaatgactattattgtatctgtggttacactcttgggtggattggggtgttgtggtagaagatat |
259 |
Q |
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| T |
29109561 |
tgattagagactggaataggactatgaccattattgtctctgtggttatattcttgggtggattgaggtattgtggtagaagatat |
29109476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 29262614 - 29262698
Alignment:
| Q |
175 |
gattagaggctggaataggccaatgactattattgtatctgtggttacactcttgggtggattggggtgttgtggtagaagatat |
259 |
Q |
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| T |
29262614 |
gattagaggctggaatatgactatgactattattgtctctgtggttatattcttaggtggattaaggtgttgtggtaggagatat |
29262698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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