View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_40 (Length: 255)
Name: NF19301_low_40
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 41569552 - 41569808
Alignment:
| Q |
12 |
atgaaatggaaaaataaataattgagaccagttccaggcttccagaagacttccaattcaagaaaattagtataaaataatatactcgtttaatttcaat |
111 |
Q |
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| T |
41569552 |
atgaaatggaaaaataaataattgagaccagttccaggcttccagaagacttccaattcaagaaaattggtataaaataatatactcgtttaatttcaat |
41569651 |
T |
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| Q |
112 |
ttgactataaatatatattaatgttgccttccttattatttcatttaac------------aattctcacaaaatttgaattgatcaatt-aaataactc |
198 |
Q |
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| T |
41569652 |
ttgactataaatatatattaatgttgccttccttattatttcatttaacaaacttttcaaaaaatctcacaaaatttgaatggatcagttaaaataactc |
41569751 |
T |
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| Q |
199 |
ccccatgaggatgttttttctatgtttgcatcttttactcttcctattttcatcctt |
255 |
Q |
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| T |
41569752 |
ccccatgagaatgtttcttctatgtttgcatcttttgcttttcctattttcatcctt |
41569808 |
T |
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