View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_41 (Length: 253)
Name: NF19301_low_41
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30956463 - 30956697
Alignment:
| Q |
1 |
ggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagt |
100 |
Q |
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| T |
30956463 |
ggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagt |
30956562 |
T |
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| Q |
101 |
ttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccatttattttattccatgattttctttgaagtattcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30956563 |
ttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttactatttattttattccatgattttctttgaagtattcattt |
30956662 |
T |
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| Q |
201 |
ttgccactcatggtagcaagattaggacatcaatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30956663 |
ttgccactcatggtagcaagattaggacatcaatt |
30956697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 30946272 - 30946462
Alignment:
| Q |
46 |
ttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaac |
145 |
Q |
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||||||||||| || || ||||||| ||||| |||| |||||||||| || ||||| || |||||||| | ||||||| ||| | | |||||||||| |
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| T |
30946272 |
ttagagccaacagctggaataagcgccaagagggcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaac |
30946371 |
T |
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| Q |
146 |
tgccgtaattgttaccatttattttattccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattt |
236 |
Q |
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| T |
30946372 |
tgccataattgttgccatttattttattgaaataatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaattt |
30946462 |
T |
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