View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_44 (Length: 249)
Name: NF19301_low_44
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43233203 - 43233443
Alignment:
| Q |
1 |
taaggagtgggaaaagttggcagtgtcaccctttcaaattaaatttgggatgcaagtttgtttaggtgtccaatatcagc---aatacatagaggattac |
97 |
Q |
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| T |
43233203 |
taaggagtgggaaaagttggcagtgtcaccctttcaaa----atttcggatgcaagtttgtttaggtgtccaatatcagcagcaatacatagaggattac |
43233298 |
T |
|
| Q |
98 |
caattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43233299 |
caattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcat |
43233398 |
T |
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| Q |
198 |
tttaggttgacttgaagtctacggtataagtttatttttcttctc |
242 |
Q |
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| T |
43233399 |
tttaggttgacttgaagtctacggtataagtttatttttcttctc |
43233443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 31982922 - 31982982
Alignment:
| Q |
108 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagt |
168 |
Q |
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| T |
31982922 |
tactcatacgttttgaatctaatgtttttctttcaattgtaactttgtcacacctgcaagt |
31982982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 8024261 - 8024395
Alignment:
| Q |
108 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
207 |
Q |
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| T |
8024261 |
tactcatacgttttgaatctaatgtttttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
8024360 |
T |
|
| Q |
208 |
cttgaagtctacggtataagtttatttttcttctc |
242 |
Q |
| |
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||||||||||| | || |||||||||||||||||| |
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| T |
8024361 |
cttgaagtctatgctacaagtttatttttcttctc |
8024395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 18647484 - 18647618
Alignment:
| Q |
108 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
207 |
Q |
| |
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|||||||| |||| |||| |||| ||||||||||| |||| |||||| | |||||||||| |||||||||||||| ||| ||||||||| ||||||| |
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| T |
18647484 |
tactcatacgttttgaatctaatgattttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
18647583 |
T |
|
| Q |
208 |
cttgaagtctacggtataagtttatttttcttctc |
242 |
Q |
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||||||||||| | || |||||||||||||||||| |
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| T |
18647584 |
cttgaagtctatgctacaagtttatttttcttctc |
18647618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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