View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_48 (Length: 240)
Name: NF19301_low_48
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 42413472 - 42413675
Alignment:
| Q |
18 |
attaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagg |
117 |
Q |
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| T |
42413472 |
attaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagg |
42413571 |
T |
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| Q |
118 |
gaataaagaggtgagaagaatgagaatttagtaggtgnnnnnnnagccattgtggaaattggttttggttttaatttgtgatatgtcctgttgttgttga |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42413572 |
gaataaagaggcgagaagaatgagaatttagtaggtgtttttttagccattgtggaaattggttttggttttaatttgtgatatgtcctgttgttgttga |
42413671 |
T |
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| Q |
218 |
tatg |
221 |
Q |
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|||| |
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| T |
42413672 |
tatg |
42413675 |
T |
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