View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19301_low_49 (Length: 240)
Name: NF19301_low_49
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2369056 - 2369282
Alignment:
| Q |
1 |
tattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369056 |
tattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
2369155 |
T |
|
| Q |
101 |
cgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369156 |
cttaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
2369255 |
T |
|
| Q |
201 |
tcgaattgctatgaaattatgtgatct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2369256 |
tcgaattgctatgaaattatgtgatct |
2369282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2363310 - 2363533
Alignment:
| Q |
1 |
tattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2363310 |
tattaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaat |
2363409 |
T |
|
| Q |
101 |
cgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2363410 |
cttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaagcaacaccaaaacaactcctcttgagattcttataaagccacgtttgtct |
2363509 |
T |
|
| Q |
201 |
tcgaattgctatgaaattatgtga |
224 |
Q |
| |
|
|||||||| ||||||||||||||| |
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|
| T |
2363510 |
tcgaattgttatgaaattatgtga |
2363533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2307545 - 2307769
Alignment:
| Q |
1 |
tattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||| || ||||| ||||| ||| |||| ||||||||| ||||||| | | | ||||||||||||||||||||||| || |
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|
| T |
2307545 |
tattgccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatat |
2307644 |
T |
|
| Q |
101 |
cgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
| |||||||| | ||||| | ||||||||| |||| | ||||||||||| ||||| ||| | ||||||||| ||||||| ||||| |||| ||||||| |
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|
| T |
2307645 |
cttaaatccaacccctgaacttgttgatatgagtgaatcctttggattaacaaacactaaagctactcctcttaagattctcattaaaccacatttgtct |
2307744 |
T |
|
| Q |
201 |
tcgaattgctatgaaattatgtgat |
225 |
Q |
| |
|
||||| |||||||| ||||||| |
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|
| T |
2307745 |
atcaattgttatgaaatcatgtgat |
2307769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2340226 - 2340450
Alignment:
| Q |
1 |
tattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||| | || || ||||| || ||||| ||||||||| ||||||| || | ||||||||||||||||||||||| || |
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|
| T |
2340226 |
tattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatat |
2340325 |
T |
|
| Q |
101 |
cgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
| |||||||| || ||| || ||||||||| |||| | ||||||| ||| || ||||| | ||||| ||||||||||| ||||| |||||||||||| |
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|
| T |
2340326 |
cttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattctcattaaaccacgtttgtct |
2340425 |
T |
|
| Q |
201 |
tcgaattgctatgaaattatgtgat |
225 |
Q |
| |
|
||||| ||||| ||||||||| |
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|
| T |
2340426 |
cacaattgttatgagtttatgtgat |
2340450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 2261295 - 2261160
Alignment:
| Q |
3 |
ttaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcg |
102 |
Q |
| |
|
|||||||||||| |||||||||| || || |||||||| || ||||| ||||| ||| | |||||||||||||||| |||||| || ||||||||||| | |
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|
| T |
2261295 |
ttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaattg |
2261196 |
T |
|
| Q |
103 |
taaatccatcaagtgaacctattgatatgactgaaa |
138 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
2261195 |
taaatggatctagtgaacctgttgatatgactgaaa |
2261160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 2351682 - 2351870
Alignment:
| Q |
4 |
taccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcgt |
103 |
Q |
| |
|
||||||||||| |||||||||| | || || | ||| || ||||| |||||||| |||||||| ||| | || |||||||||||||||||||| ||| | |
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|
| T |
2351682 |
taccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatctt |
2351781 |
T |
|
| Q |
104 |
aaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccac |
192 |
Q |
| |
|
||||||| || | || | |||||||||||||| ||||||||| | ||||||||| | ||||| ||||||||||| ||||| |||| |
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|
| T |
2351782 |
aaatccaacacccggacttgttgatatgactgaagaatttggattagcaaacaccaaagctactccacttgagattctcattaaaccac |
2351870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 2357997 - 2358216
Alignment:
| Q |
3 |
ttaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcg |
102 |
Q |
| |
|
|||||||||||| |||||||||| ||||| || | ||| || ||||| || ||||| ||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
2357997 |
ttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct |
2358096 |
T |
|
| Q |
103 |
taaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttc |
202 |
Q |
| |
|
| || |||| ||||| |||||||||||||| ||| |||||||| || | ||||| | || || ||||||||||| |||| ||| |||||||| |
|
|
| T |
2358097 |
tgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgt |
2358196 |
T |
|
| Q |
203 |
gaattgctatgaaattatgt |
222 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
2358197 |
taattgctacgaaactatgt |
2358216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4306008 - 4306222
Alignment:
| Q |
1 |
tattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4306008 |
tattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgcattcctttgaaat |
4306107 |
T |
|
| Q |
101 |
cgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||||| |||||||| | |||||| ||| ||||||| || ||||||||||||||||| |||||| || |
|
|
| T |
4306108 |
ctcaaaggcatcagctgaacctattgatatgactgaagcttttggaatcaccaaccacaaggcaactccactagagattcttattaagcctcgtttgcct |
4306207 |
T |
|
| Q |
201 |
tcgaattgctatgaa |
215 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
4306208 |
tctaattgttatgaa |
4306222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 5804254 - 5804059
Alignment:
| Q |
5 |
accatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcgta |
104 |
Q |
| |
|
|||||||||| |||||||||| | || || ||||| | ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| ||| || |
|
|
| T |
5804254 |
accatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatctta |
5804155 |
T |
|
| Q |
105 |
aatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
200 |
Q |
| |
|
|||||| || ||||| |||||||||||||||| ||||||||||| || | |||| | ||||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
5804154 |
aatccaacacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtct |
5804059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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