View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_51 (Length: 236)
Name: NF19301_low_51
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39346207 - 39345986
Alignment:
| Q |
1 |
catagggcaccccaaaaaatgagagcatcaacaagaaggaacaaaatttcaacgaaaatcatgtcatgtcacgatctcattgattttgccaatggcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346207 |
catagggcaccccaaaaaatgagagcatcaacaagaaggaacaaaatttcaatgaaaatcatgtcatgtcacgatctcattgattttgccaatggcaatt |
39346108 |
T |
|
| Q |
101 |
cactttcatgtgaggcaacagaagataccctattcaattgagcagcaccaacaccttttggtgattgagttgcaacctcaacatctccattcctaggtgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346107 |
cactttcatgtgaggcaacagaagataccctattcaattgagcagcaccaacaccttttggtgattgagttgcaacctcaacatctccattcctaggtgt |
39346008 |
T |
|
| Q |
201 |
agttgaaccaccccaatttcct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
39346007 |
agttgaaccaccccaatttcct |
39345986 |
T |
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