View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_52 (Length: 236)
Name: NF19301_low_52
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 43232410 - 43232331
Alignment:
| Q |
144 |
ttataagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaa |
223 |
Q |
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| T |
43232410 |
ttataagactgcagctttaagaaggaaaaaagagaaataaaaacataacacaaacttataaataaagggtatgtatacaa |
43232331 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 43233103 - 43233060
Alignment:
| Q |
79 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43233103 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
43233060 |
T |
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