View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_56 (Length: 223)
Name: NF19301_low_56
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 52272799 - 52273003
Alignment:
| Q |
1 |
ctactttgagacgaagaaataccaaattgtattgtataactagctggaatatggactaaccataggagaaggaatactttcacggctcgaatgatctgca |
100 |
Q |
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| T |
52272799 |
ctactttgagacgaagaaataccaaattgtattgtataactagctggaatattgactaaccataggagaaggaatactttcacggctcgaatgatctgca |
52272898 |
T |
|
| Q |
101 |
gcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcggattcagcattttcaatcttattagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52272899 |
gcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcggattcagcattttcaatcttattagtta |
52272998 |
T |
|
| Q |
201 |
tctct |
205 |
Q |
| |
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||||| |
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| T |
52272999 |
tctct |
52273003 |
T |
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