View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_57 (Length: 222)
Name: NF19301_low_57
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 8404936 - 8405125
Alignment:
| Q |
19 |
tctgagcgtgaagctgcttctatatttaagcagattatgaatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatt |
118 |
Q |
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| T |
8404936 |
tctgagcgtgaagctgcttctatatttaagcagattatgaatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatt |
8405035 |
T |
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| Q |
119 |
tcttgcttgctagtaaagatcataaggctcctttgaaagccactgattttggattgtctgttttcattgaagaaggttagtagtagttag |
208 |
Q |
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| T |
8405036 |
tcttgcttgctagtaaagatcataaggctcctttgaaagccactgattttggattgtctgtttttattgaagaaggttagtagtagttag |
8405125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 8403557 - 8403703
Alignment:
| Q |
49 |
cagattatgaatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatttcttgcttgctagtaaagatcataaggctc |
148 |
Q |
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| T |
8403557 |
cagattgtgaatgtggtgcatgtgtgtcattttatgggtgttatgcatcgtgatcttaagcctgagaatttcttgcttgcttcaaaagatgagaatgctg |
8403656 |
T |
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| Q |
149 |
ctttgaaagccactgattttggattgtctgttttcattgaagaaggt |
195 |
Q |
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| T |
8403657 |
ctgttaaagctactgattttggactctccattttccttgaagaaggt |
8403703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 20501436 - 20501600
Alignment:
| Q |
31 |
gctgcttctatatttaagcagattatgaatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatttcttgcttgcta |
130 |
Q |
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| T |
20501436 |
gctgcttctatttgtagacagattgttaatgttgttaatatttgtcattttatgggagttatgcatagggatctgaaaccagagaatttcttgttggcta |
20501535 |
T |
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| Q |
131 |
gtaaagatcataaggctcctttgaaagccactgattttggattgtctgttttcattgaagaaggt |
195 |
Q |
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| T |
20501536 |
gtaaagatgaaaatgcacttcttaaggctactgattttggtttgtctgttttcattgaagaaggt |
20501600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 40537108 - 40537245
Alignment:
| Q |
58 |
aatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatttcttgcttgctagtaaagatcataaggctcctttgaaag |
157 |
Q |
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| T |
40537108 |
aatgttgttcatatttgtcattttatgggtgtgatgcatagagatttgaagccagaaaatttcttgttgtctagtaaggatgataaggcaactatcaagg |
40537207 |
T |
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| Q |
158 |
ccactgattttggattgtctgttttcattgaagaaggt |
195 |
Q |
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| T |
40537208 |
ccgctgatttcggtttgtcggttttcattgaagaaggt |
40537245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 40532143 - 40532280
Alignment:
| Q |
58 |
aatgtggttcatgcttgtcattttatgggggtcatgcatagggaccttaagcctgagaatttcttgcttgctagtaaagatcataaggctcctttgaaag |
157 |
Q |
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| T |
40532143 |
aatgttgttcatatttgtcattttatgggtgtgatgcatagagatttgaaaccagaaaatttcttgttgtctagtaaggatgataaggcaactatcaagg |
40532242 |
T |
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| Q |
158 |
ccactgattttggattgtctgttttcattgaagaaggt |
195 |
Q |
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| T |
40532243 |
ccactgatttcggtttgtcggttttcatcgaagaaggt |
40532280 |
T |
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