View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19301_low_6 (Length: 478)

Name: NF19301_low_6
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19301_low_6
NF19301_low_6
[»] chr4 (15 HSPs)
chr4 (20-327)||(4025577-4025900)
chr4 (381-425)||(37097811-37097855)
chr4 (381-425)||(52810932-52810976)
chr4 (331-373)||(3987640-3987682)
chr4 (387-425)||(26941841-26941879)
chr4 (387-425)||(33912023-33912061)
chr4 (41-136)||(3953909-3954005)
chr4 (381-425)||(4026053-4026097)
chr4 (381-425)||(37288949-37288993)
chr4 (381-425)||(46529003-46529047)
chr4 (381-426)||(11290147-11290193)
chr4 (126-187)||(4002811-4002872)
chr4 (381-425)||(2016512-2016556)
chr4 (381-417)||(21644483-21644519)
chr4 (149-181)||(34200554-34200586)
[»] chr7 (17 HSPs)
chr7 (381-425)||(39550058-39550102)
chr7 (381-421)||(27729558-27729598)
chr7 (381-425)||(36270550-36270594)
chr7 (381-425)||(34748757-34748802)
chr7 (381-425)||(44314384-44314429)
chr7 (381-425)||(47346174-47346219)
chr7 (381-425)||(19843687-19843731)
chr7 (387-430)||(47346409-47346453)
chr7 (388-426)||(20296242-20296280)
chr7 (387-425)||(22206364-22206402)
chr7 (387-425)||(22228337-22228375)
chr7 (381-426)||(24240470-24240516)
chr7 (381-426)||(37756244-37756290)
chr7 (381-426)||(37761992-37762038)
chr7 (381-425)||(27585235-27585280)
chr7 (381-425)||(36495868-36495913)
chr7 (381-425)||(37756018-37756063)
[»] chr5 (11 HSPs)
chr5 (381-425)||(22196633-22196677)
chr5 (381-423)||(22196406-22196448)
chr5 (381-425)||(33040449-33040494)
chr5 (381-425)||(19439840-19439884)
chr5 (381-425)||(29396423-29396468)
chr5 (381-425)||(33040264-33040309)
chr5 (382-425)||(83891-83935)
chr5 (381-425)||(18541930-18541974)
chr5 (381-428)||(32395394-32395442)
chr5 (382-426)||(84115-84160)
chr5 (381-425)||(2471773-2471817)
[»] chr1 (15 HSPs)
chr1 (381-425)||(45443200-45443244)
chr1 (381-425)||(12287828-12287872)
chr1 (381-425)||(18585018-18585062)
chr1 (372-426)||(29383694-29383748)
chr1 (381-426)||(31411640-31411686)
chr1 (381-425)||(17294846-17294891)
chr1 (381-425)||(17294957-17295002)
chr1 (381-425)||(4187362-4187407)
chr1 (381-425)||(4187593-4187638)
chr1 (381-425)||(29228654-29228699)
chr1 (381-425)||(33562207-33562252)
chr1 (381-426)||(45858634-45858679)
chr1 (381-425)||(51722232-51722277)
chr1 (381-425)||(40521573-40521617)
chr1 (381-425)||(45858859-45858903)
[»] chr3 (15 HSPs)
chr3 (381-424)||(9179114-9179157)
chr3 (381-425)||(48837088-48837132)
chr3 (382-425)||(16051616-16051659)
chr3 (381-426)||(24453757-24453802)
chr3 (382-422)||(16045451-16045491)
chr3 (382-422)||(16060966-16061006)
chr3 (381-425)||(40769992-40770036)
chr3 (387-426)||(10856712-10856751)
chr3 (381-425)||(10450504-10450549)
chr3 (381-425)||(10450728-10450773)
chr3 (381-425)||(15820685-15820730)
chr3 (381-425)||(48511490-48511535)
chr3 (381-425)||(53966212-53966257)
chr3 (381-425)||(9180348-9180392)
chr3 (381-425)||(51734637-51734680)
[»] chr8 (9 HSPs)
chr8 (387-425)||(35908658-35908696)
chr8 (381-425)||(18464049-18464094)
chr8 (381-425)||(9596073-9596117)
chr8 (381-425)||(15711476-15711520)
chr8 (381-425)||(38287817-38287861)
chr8 (381-425)||(20232477-20232522)
chr8 (381-426)||(9596299-9596344)
chr8 (381-425)||(14019787-14019832)
chr8 (222-265)||(5071685-5071729)
[»] scaffold0785 (1 HSPs)
scaffold0785 (388-425)||(2983-3020)
[»] chr2 (14 HSPs)
chr2 (381-425)||(4342338-4342382)
chr2 (381-425)||(4506120-4506164)
chr2 (381-425)||(28193655-28193699)
chr2 (387-426)||(32197181-32197220)
chr2 (381-425)||(10862138-10862182)
chr2 (381-425)||(10862286-10862330)
chr2 (381-429)||(44266388-44266436)
chr2 (381-425)||(11349873-11349918)
chr2 (381-425)||(15961880-15961925)
chr2 (381-425)||(15962237-15962282)
chr2 (381-426)||(17326111-17326156)
chr2 (381-425)||(39420676-39420721)
chr2 (381-425)||(32196890-32196934)
chr2 (381-425)||(33532816-33532860)
[»] chr6 (6 HSPs)
chr6 (145-191)||(10565370-10565416)
chr6 (381-425)||(26842699-26842744)
chr6 (381-425)||(33396286-33396331)
chr6 (381-425)||(13673835-13673879)
chr6 (381-425)||(23591510-23591553)
chr6 (142-178)||(25107174-25107210)
[»] scaffold0012 (1 HSPs)
scaffold0012 (381-425)||(165764-165808)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 4025900 - 4025577
Alignment:
Q  20 acacgtcacatctttagcccttgatcttactaaggaggaagggaaagacggagacgttccatcatgggtgttgaacttctcattacaaactttcaatgaa 119  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||    
T  4025900 acacatcacatttttagtccttgatcttactaaggaggaagggaaagacagagactttccatcatgggtgttgaacctctcattacaaactttcaacgaa 4025801  T
Q  120 atgcgtttatagtagtgccattaactatgtagtactgacacttcacattg---------aaggcatgtttggtgtccgatacgtatcaaggtccaacatc 210  Q
    || ||||| ||||||||||||||||||| ||||||  |||||||| || |         ||| ||||| | ||||||||||||| |||| |||| |||||    
T  4025800 atacgtttgtagtagtgccattaactatatagtacaaacacttcatatggttgcacaaaaagacatgtctagtgtccgatacgtgtcaacgtcctacatc 4025701  T
Q  211 tacacgaaaatacacatatgattacatttaatcactt-tattatcttaagttattatca--------gtgtcagtgtcgtgttcaatgtctgtttcaatg 301  Q
    ||||| |||| ||||  ||| |||||||||||||||| |||| ||||||||||| ||||        ||||| ||||| |||||||||| ||| || |||    
T  4025700 tacacaaaaagacac--atggttacatttaatcacttctattttcttaagttatcatcagggtctatgtgtcggtgtcatgttcaatgtttgtgtctatg 4025603  T
Q  302 ttagtgcttcgtaggcctttatcttt 327  Q
    ||||||||||||||||||||||||||    
T  4025602 ttagtgcttcgtaggcctttatcttt 4025577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 37097811 - 37097855
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  37097811 ctatctgatgtgggactaaatcccaccgagtgttggtcgctaaca 37097855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 52810932 - 52810976
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  52810932 ctatccgatgtgggactaaatcccaccgagtgttggccgctaaca 52810976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 3987682 - 3987640
Alignment:
Q  331 tgagccgggattaatatgaatctgaatatctcgagggattggt 373  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3987682 tgagccgggattaatatgaatctgaatatctcgaaggattggt 3987640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 26941879 - 26941841
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26941879 gatgtgggactaaatcccaccgagtgttggccgctaaca 26941841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 33912061 - 33912023
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33912061 gatgtgggactaaatcccaccgagtgttggccgctaaca 33912023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 3953909 - 3954005
Alignment:
Q  41 tgatcttactaaggaggaagggaaag--acggagacgttccatcatgggtgttgaacttctcattacaaactttcaatgaaatgcgtttatagtagtg 136  Q
    ||||| ||||||||||||||||||||  | ||| | ||||||||||| ||||||||| ||| ||||||||||| |||  ||||  |||||||||||||    
T  3953909 tgatcctactaaggaggaagggaaagggaagga-atgttccatcatgagtgttgaacctctaattacaaacttccaaacaaataagtttatagtagtg 3954005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 4026097 - 4026053
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  4026097 ctatccgatgtgggactaaatcccactgagtgttggccgccaaca 4026053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 37288949 - 37288993
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  37288949 ctatccgatgtgggactaaatcccaccgattgttggcagctaaca 37288993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 46529003 - 46529047
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||    
T  46529003 ctatccgatgtgagactaaatcccaccgagtgttggctgctaaca 46529047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 11290193 - 11290147
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  11290193 ctatccgatgtgggactaaatcccacccgagagttggccgctaacat 11290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 4002872 - 4002811
Alignment:
Q  126 ttatagtagtgccattaactatgtagtactgacacttcacattgaaggcatgtttggtgtcc 187  Q
    ||||||||||  ||||||||||||||||||||  ||||| |||||||| ||||  |||||||    
T  4002872 ttatagtagtatcattaactatgtagtactgatgcttcaaattgaaggtatgtcaggtgtcc 4002811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 2016556 - 2016512
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||| |||||||||||  |||||||||||| ||||||    
T  2016556 ctatctgatgtgagactaaatcccctcgagtgttggccactaaca 2016512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 21644519 - 21644483
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggc 417  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  21644519 ctatctgatgtgggattaaatcccaccgactgttggc 21644483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 34200554 - 34200586
Alignment:
Q  149 tagtactgacacttcacattgaaggcatgtttg 181  Q
    |||||||||||||||||||||||||| ||||||    
T  34200554 tagtactgacacttcacattgaaggcgtgtttg 34200586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 39550058 - 39550102
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  39550058 ctatccgatgtgggactaaatcccaccgagtgttggccgctaaca 39550102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 27729558 - 27729598
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgct 421  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  27729558 ctatccgatgtgggactaaatcccaccgagtgttggccgct 27729598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 36270550 - 36270594
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  36270550 ctatccgatgtgggactaaatcccaccgagtgttgaccgctaaca 36270594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 34748802 - 34748757
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  34748802 ctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 34748757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 44314384 - 44314429
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44314384 ctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 44314429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 47346174 - 47346219
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  47346174 ctatctgatgtgggactaaatcccacccgagagttggccgctaaca 47346219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 19843731 - 19843687
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
T  19843731 ctatctgatttgggactaaatcccttcgagtgttggccgctaaca 19843687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 47346409 - 47346453
Alignment:
Q  387 gatgtgggactaaatccca-ccgagtgttggccgctaacattttt 430  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  47346409 gatgtgggactaaatcccacccgagagttggccgctaacattttt 47346453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 20296280 - 20296242
Alignment:
Q  388 atgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  20296280 atgtgggactaaatcccctcgagtgttggccgctaacat 20296242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 22206364 - 22206402
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  22206364 gatgtgggactaaatcccaccgagtgattgccgctaaca 22206402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 22228375 - 22228337
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  22228375 gatgtgggactaaatcccaccgagtgattgccgctaaca 22228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 24240470 - 24240516
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  24240470 ctatccgatgtgggactaaatcccacccgagagttggccgctaacat 24240516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 37756244 - 37756290
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  37756244 ctatccgatgtgggactaaatcccacccgagagttggccgctaacat 37756290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 37761992 - 37762038
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  37761992 ctatccgatgtgggactaaatcccacccgagagttggccgctaacat 37762038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 27585280 - 27585235
Alignment:
Q  381 ctatctgatgtgggactaaatcccacc-gagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  27585280 ctatccgatgtgggactaaatcccacctgagtgttggctgctaaca 27585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 36495913 - 36495868
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  36495913 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 36495868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 37756018 - 37756063
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  37756018 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37756063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 22196633 - 22196677
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  22196633 ctatccgatgtgggactaaatcccaccgagtgttggccgctaaca 22196677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 22196406 - 22196448
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaa 423  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  22196406 ctatccgatgtgggactaaatcccaccgagtgttggccgctaa 22196448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 33040494 - 33040449
Alignment:
Q  381 ctatctgatgtgggactaaatcccac-cgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  33040494 ctatctgatgtgggactaaatcccacgcgagtgttggccgctaaca 33040449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 19439884 - 19439840
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  19439884 ctatctgatgtgggactaaatcccctcgagtgttggccgctaaca 19439840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 29396423 - 29396468
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  29396423 ctatctgatgtgggactaaatcccacccgagagttggccgctaaca 29396468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 33040309 - 33040264
Alignment:
Q  381 ctatctgatgtgggactaaatcccac-cgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  33040309 ctatccgatgtgggactaaatcccacgcgagtgttggccgctaaca 33040264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 83891 - 83935
Alignment:
Q  382 tatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||    
T  83891 tatccgatgtgggactaaatcccacccgagtgttggccgctaaca 83935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 18541974 - 18541930
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||    
T  18541974 ctatccgatgtgagactaaatcccaccaagtgttggccgctaaca 18541930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 32395394 - 32395442
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacattt 428  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  32395394 ctatccgatgtgggactaaatcccacccgagagttggccgctaacattt 32395442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 84115 - 84160
Alignment:
Q  382 tatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  84115 tatccgatgtgggactaaatcccacccgagtgttggccactaacat 84160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 2471773 - 2471817
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||||    
T  2471773 ctatccgatgtgggactaaatcccctcgagtgttggctgctaaca 2471817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 45443244 - 45443200
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  45443244 ctatccgatgtgggactaaatcccaccgagtgttggccgctaaca 45443200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 12287872 - 12287828
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  12287872 ctatccgatgtgggactaaatcccaccgagtgttggccactaaca 12287828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 18585062 - 18585018
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||    
T  18585062 ctatccgatgtgggactaaatcccaccgagtgttggctgctaaca 18585018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 29383694 - 29383748
Alignment:
Q  372 gtatctgagctatctgatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    |||||| | ||||| |||||||||||||||||  |||||||||||||||||||||    
T  29383694 gtatcttatctatccgatgtgggactaaatccacccgagtgttggccgctaacat 29383748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 31411640 - 31411686
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaacat 426  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  31411640 ctatctgatgtgggactaaatcccacccgagtgttggccactaacat 31411686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 17294891 - 17294846
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  17294891 ctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 17294846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 17295002 - 17294957
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  17295002 ctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 17294957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4187362 - 4187407
Alignment:
Q  381 ctatctgatgtgggactaaatcccac-cgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||    
T  4187362 ctatccgatgtgggactaaatcccactcgagagttggccgctaaca 4187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4187593 - 4187638
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  4187593 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 4187638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 29228699 - 29228654
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  29228699 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 29228654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 33562207 - 33562252
Alignment:
Q  381 ctatctgatgtgggactaaatcccacc-gagtgttggccgctaaca 425  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||    
T  33562207 ctatccgatgtgggactaaaacccacccgagtgttggccgctaaca 33562252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 45858679 - 45858634
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||   |||||||||||||||||||    
T  45858679 ctatccgatgtgggactaaatccccatgagtgttggccgctaacat 45858634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 51722277 - 51722232
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  51722277 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 51722232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 40521573 - 40521617
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||    
T  40521573 ctatccgatgtgggactaaatcacctcgagtgttggccgctaaca 40521617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 45858903 - 45858859
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||| |||||||||||  |||||||||||||||||||    
T  45858903 ctatccgatgtgagactaaatcccctcgagtgttggccgctaaca 45858859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 9179157 - 9179114
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaac 424  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  9179157 ctatccgatgtgggactaaatcccaccgagtgttggccgctaac 9179114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 48837088 - 48837132
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||    
T  48837088 ctatccgatgtgggactaaatcccaccgagtgttggcagctaaca 48837132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 16051616 - 16051659
Alignment:
Q  382 tatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  16051616 tatctgatgtgggactaaatcccattgagtgttggccgctaaca 16051659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 24453802 - 24453757
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||    
T  24453802 ctatccgatgtgggactaaatcccctcgagtgttggccgctaacat 24453757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 16045451 - 16045491
Alignment:
Q  382 tatctgatgtgggactaaatcccaccgagtgttggccgcta 422  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  16045451 tatccgatgtgggactaaatcccatcgagtgttggccgcta 16045491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 16060966 - 16061006
Alignment:
Q  382 tatctgatgtgggactaaatcccaccgagtgttggccgcta 422  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  16060966 tatccgatgtgggactaaatcccatcgagtgttggccgcta 16061006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 40769992 - 40770036
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  40769992 ctatccgatgtgggactaaatcccctcgagtgttggccgctaaca 40770036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 10856712 - 10856751
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  10856712 gatgtgggactaaatcccaccaagtattggccgctaacat 10856751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 10450504 - 10450549
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  10450504 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 10450549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 10450728 - 10450773
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  10450728 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 10450773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 15820685 - 15820730
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  15820685 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 15820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 48511490 - 48511535
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  48511490 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 48511535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 53966257 - 53966212
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  53966257 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 53966212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 9180392 - 9180348
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||| | |||| ||||||||||||||    
T  9180392 ctatccgatgtgggactaaatccgatcgagggttggccgctaaca 9180348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 51734637 - 51734680
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||    
T  51734637 ctatccgatgtgggactaaat-ccaccgagtgttggctgctaaca 51734680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 35908696 - 35908658
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35908696 gatgtgggactaaatcccaccgagtgttggccgctaaca 35908658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 18464094 - 18464049
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  18464094 ctatctgatgtgggactaaatcccacccgagtgttggccgctaaca 18464049  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 9596073 - 9596117
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  9596073 ctatccgatgtggaactaaatcccaccgagtgttggccgctaaca 9596117  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 15711520 - 15711476
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||    
T  15711520 ctatccgatgtgggactaaatcccaccgagtgttggctgctaaca 15711476  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 38287817 - 38287861
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  38287817 ctatccgatgtgggactaaatcccaccgagtgttggcccctaaca 38287861  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 20232477 - 20232522
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  20232477 ctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 20232522  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 9596299 - 9596344
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||| ||| || ||||||||||||||||||||||||| |||||||    
T  9596299 ctatccgatatgagactaaatcccaccgagtgttggccactaacat 9596344  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 14019832 - 14019787
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  14019832 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 14019787  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 5071729 - 5071685
Alignment:
Q  222 acacatatgattacatttaatcactt-tattatcttaagttatta 265  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||    
T  5071729 acacatatgattacattcaatcacttgtattttcttaagttatta 5071685  T

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Target: scaffold0785 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 2983 - 3020
Alignment:
Q  388 atgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2983 atgtgggactaaatcccaccgagtgttggccgctaaca 3020  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4342338 - 4342382
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  4342338 ctatccgatgtgggactaaatcccactgagtgttggccgctaaca 4342382  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4506120 - 4506164
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||    
T  4506120 ctatccgatgtgggactaaatcccaccgagtgttggcagctaaca 4506164  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 28193655 - 28193699
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  28193655 ctatctgatgtgggactaaatcccctcgagtgttggccgctaaca 28193699  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 32197220 - 32197181
Alignment:
Q  387 gatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32197220 gatgtgggactaaatcccatcgagtgttggccgctaacat 32197181  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 10862138 - 10862182
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  10862138 ctatccgatgtgggactaaatcccctcgagtgttggccgctaaca 10862182  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 10862330 - 10862286
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  10862330 ctatccgatgtgggactaaatcccctcgagtgttggccgctaaca 10862286  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 44266388 - 44266436
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaacatttt 429  Q
    ||||||||||||||||||||||||  ||| |||||||| ||||||||||    
T  44266388 ctatctgatgtgggactaaatcccctcgaatgttggccactaacatttt 44266436  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 11349873 - 11349918
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  11349873 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 11349918  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 15961880 - 15961925
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  15961880 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 15961925  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 15962237 - 15962282
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  15962237 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 15962282  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 17326111 - 17326156
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaacat 426  Q
    ||||| |||||||||||||||| |||  ||||||||||||||||||    
T  17326111 ctatcagatgtgggactaaatctcactaagtgttggccgctaacat 17326156  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 39420721 - 39420676
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  39420721 ctatccgatgtgggactaaatcccacccgagagttggccgctaaca 39420676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 32196934 - 32196890
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| |||||| |||||||| ||||||||||||| |||||||||    
T  32196934 ctatccgatgtgagactaaattccaccgagtgttgaccgctaaca 32196890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 33532816 - 33532860
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||  |||||||||||| ||||||    
T  33532816 ctatccgatgtgggactaaatcccctcgagtgttggccactaaca 33532860  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 10565416 - 10565370
Alignment:
Q  145 tatgtagtactgacacttcacattgaaggcatgtttggtgtccgata 191  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||||||    
T  10565416 tatgtagtactggcacttcatattgaaggcacatttggtgtccgata 10565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 26842744 - 26842699
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  26842744 ctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 26842699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 33396331 - 33396286
Alignment:
Q  381 ctatctgatgtgggactaaatccca-ccgagtgttggccgctaaca 425  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||    
T  33396331 ctatccgatgtgggactaaatcccaccctagtgttggccgctaaca 33396286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 13673879 - 13673835
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    |||||||||||| || ||||| |||| ||||||||||||||||||    
T  13673879 ctatctgatgtgagattaaattccactgagtgttggccgctaaca 13673835  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 23591553 - 23591510
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||    
T  23591553 ctatctgatgtgggattaaatcc-accgagtgttggctgctaaca 23591510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 25107210 - 25107174
Alignment:
Q  142 aactatgtagtactgacacttcacattgaaggcatgt 178  Q
    |||||||||| |||||||||||| |||||||||||||    
T  25107210 aactatgtagcactgacacttcatattgaaggcatgt 25107174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 165808 - 165764
Alignment:
Q  381 ctatctgatgtgggactaaatcccaccgagtgttggccgctaaca 425  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||    
T  165808 ctatccgatgtaggactaaatcccctcgagtgttggccgctaaca 165764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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