View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_8 (Length: 449)
Name: NF19301_low_8
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 40 - 442
Target Start/End: Original strand, 56388697 - 56389092
Alignment:
| Q |
40 |
acgaaggctccgtccaaatataatgatactatgagaatcacttttctacacttccgaggatgcatatgtattgcgttnnnnnnntatatatacattattg |
139 |
Q |
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| T |
56388697 |
acgaaggctccgtccaaatataatgatactatgagaatcactt----------ccgaggatgcatatgtattgcgttaaaaaa--aaaaatacactattg |
56388784 |
T |
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| Q |
140 |
ggaattttgttttactaacttaaaaaattcttatgtattttattaaatnnnnnnngtgtttggtatgtaacnnnnnnnnnn-agttttcttgtatgaaag |
238 |
Q |
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| T |
56388785 |
ggaattttgttttactaacttaaaaaattcttatgtattttattaaa-----aaagtgtttggtatgtaacttttttttttgagttttcttgtatgaaag |
56388879 |
T |
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| Q |
239 |
agtttaacatcaacatttagattgaatacatggttcgtatt---------tatattattttaattttaacactctcacttgtctttcacgtactctacct |
329 |
Q |
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| T |
56388880 |
agtttaacatcaacatttagattgaatacatgcttcgtattatattatactatattattttaattttaacactctcacttgtctttcacgtactctacct |
56388979 |
T |
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| Q |
330 |
cttccaattcttcttatgggcaactaatttaaaaagcttccatcaatactcgtttcatgcagttcgatcttggtttgcttgtcaaacaaatctacctctc |
429 |
Q |
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| T |
56388980 |
cttccaattcttcttatgggcaactaatttaaaaagcttccatcaatactcgtttcatgcagttcgatcttggtttgcttgtcaaacaaatctacttctc |
56389079 |
T |
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